GitHub - nikihowe/MacroFold: Can be used to efficiently perform various calculations on RNA sequences.

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Can be used to efficiently perform various calculations on RNA sequences.

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
crumple		crumple
data		data
plots		plots
points		points
scripts		scripts
tests		tests
Icon		Icon
MacroFold.py		MacroFold.py
Manual.pdf		Manual.pdf
Multiplicity.py		Multiplicity.py
README.txt		README.txt
makePairs.py		makePairs.py
optimization.png		optimization.png
printing.py		printing.py
processData.py		processData.py
remove.py		remove.py
string_tests.py		string_tests.py

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MacroFold is designed to be able to:

0. Calculate the partition function of a given sequence
1. Calculate the free energy of a given fold
2. Calculate base-pair probabilities of a given sequence
3. Generate a set of representative folds of a given sequence
4. Calculate the multiplicity of microstates of a given sequence

See the Manual (effectively the appendices of my honours thesis) for some documentation.

Feel free to contact nikihowe AT gmail DOT com for help using the program!