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Merge pull request #93 from bcalford/main
Live ipywidget functionality
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| Original file line number | Diff line number | Diff line change |
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@@ -10,3 +10,6 @@ __pycache__ | |
| src/ipyniivue/static | ||
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| launch.json | ||
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| # OS Specific | ||
| .DS_Store | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,166 @@ | ||
| { | ||
| "cells": [ | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "f26da1e3-877f-4893-8baa-8b9460601205", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "!mkdir -p ../images/\n", | ||
| "path=\"https://github.com/niivue/niivue/raw/main/demos/images/\"\n", | ||
| "!wget {path}mni152.nii.gz -P ../images/\n", | ||
| "!wget {path}hippo.nii.gz -P ../images/" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "cda3a5f6-5bed-4190-82a7-057e17fa6635", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "import ipywidgets\n", | ||
| "\n", | ||
| "from ipyniivue import NiiVue, SliceType, WidgetObserver\n", | ||
| "\n", | ||
| "volumes = [\n", | ||
| " { \"path\": \"../images/mni152.nii.gz\", \"colormap\": \"gray\",\n", | ||
| " \"visible\": True, \"opacity\": 1.0 },\n", | ||
| " { \"path\": \"../images/hippo.nii.gz\", \"colormap\": \"red\",\n", | ||
| " \"visible\": True, \"opacity\": 1.0 },\n", | ||
| "]\n", | ||
| "\n", | ||
| "nv = NiiVue(slice_type=SliceType.MULTIPLANAR)\n", | ||
| "nv.load_volumes(volumes)\n", | ||
| "\n", | ||
| "widgetArray = []\n", | ||
| "\n", | ||
| "widget_slice_type = {\n", | ||
| "\n", | ||
| " \"widget\": ipywidgets.RadioButtons(\n", | ||
| " options=[('Axial', 0), ('Coronal', 1), ('Sagittal', 2),\n", | ||
| " ('Multiplanar', 3), ('Render', 4)],\n", | ||
| " value=3,\n", | ||
| " description='Slice Type:'),\n", | ||
| "\n", | ||
| " \"object\": nv,\n", | ||
| "\n", | ||
| " \"attribute\": \"slice_type\"\n", | ||
| "}\n", | ||
| "widgetArray.append(widget_slice_type)\n", | ||
| "\n", | ||
| "widget_scan_opacity = {\n", | ||
| "\n", | ||
| " \"widget\": ipywidgets.FloatSlider(\n", | ||
| " value=1.0,\n", | ||
| " min=0.0,\n", | ||
| " max=1.0,\n", | ||
| " step=0.1,\n", | ||
| " description='Scan Opacity:',\n", | ||
| " orientation='horizontal'),\n", | ||
| "\n", | ||
| " \"object\": nv.volumes[0],\n", | ||
| "\n", | ||
| " \"attribute\": \"opacity\"\n", | ||
| "}\n", | ||
| "widgetArray.append(widget_scan_opacity)\n", | ||
| "\n", | ||
| "widget_hippo_opacity = {\n", | ||
| "\n", | ||
| " \"widget\": ipywidgets.FloatSlider(\n", | ||
| " value=1.0,\n", | ||
| " min=0.0,\n", | ||
| " max=1.0,\n", | ||
| " step=0.1,\n", | ||
| " description='Hippocampus Opacity:',\n", | ||
| " orientation='horizontal'),\n", | ||
| "\n", | ||
| " \"object\": nv.volumes[1],\n", | ||
| "\n", | ||
| " \"attribute\": \"opacity\"\n", | ||
| "}\n", | ||
| "widgetArray.append(widget_hippo_opacity)\n", | ||
| "\n", | ||
| "widget_scan_colormap = {\n", | ||
| "\n", | ||
| " \"widget\": ipywidgets.Select(\n", | ||
| " options=['Gray', 'Red', 'Blue', 'Green'],\n", | ||
| " value='Gray',\n", | ||
| " description='Scan Colormap:'),\n", | ||
| "\n", | ||
| " \"object\": nv.volumes[0],\n", | ||
| "\n", | ||
| " \"attribute\": \"colormap\"\n", | ||
| "}\n", | ||
| "widgetArray.append(widget_scan_colormap)\n", | ||
| "\n", | ||
| "widget_hippo_colormap = {\n", | ||
| "\n", | ||
| " \"widget\": ipywidgets.Select(\n", | ||
| " options=['Red', 'Blue', 'Green', 'Gray'],\n", | ||
| " value='Red',\n", | ||
| " description='Hippocampus Colormap:'),\n", | ||
| "\n", | ||
| " \"object\": nv.volumes[1],\n", | ||
| "\n", | ||
| " \"attribute\": \"colormap\"\n", | ||
| "}\n", | ||
| "widgetArray.append(widget_hippo_colormap)\n", | ||
| "\n", | ||
| "for widget in widgetArray:\n", | ||
| " WidgetObserver(**widget)" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "cce13351-2f24-49fb-b8f6-4bac07f7b2dc", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "nv" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "66b82692-c7b0-471d-8134-f399cf9ac399", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "for widget in widgetArray:\n", | ||
| " display(widget[\"widget\"])" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "4c94695d-b936-472e-a4f1-7dc216833388", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [] | ||
| } | ||
| ], | ||
| "metadata": { | ||
| "kernelspec": { | ||
| "display_name": "Python 3 (ipykernel)", | ||
| "language": "python", | ||
| "name": "python3" | ||
| }, | ||
| "language_info": { | ||
| "codemirror_mode": { | ||
| "name": "ipython", | ||
| "version": 3 | ||
| }, | ||
| "file_extension": ".py", | ||
| "mimetype": "text/x-python", | ||
| "name": "python", | ||
| "nbconvert_exporter": "python", | ||
| "pygments_lexer": "ipython3", | ||
| "version": "3.12.3" | ||
| } | ||
| }, | ||
| "nbformat": 4, | ||
| "nbformat_minor": 5 | ||
| } |
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