ENH - piped in freesurfer sbatch job submission to gui

nih-megcore · Oct 16, 2024 · e3d79bd · e3d79bd
1 parent 3b89444
commit e3d79bd
Showing 1 changed file with 7 additions and 1 deletion.
diff --git a/nih2mne/GUI/qt_gui.py b/nih2mne/GUI/qt_gui.py
@@ -346,7 +346,13 @@ def select_qa_file(self):
 
 
     def proc_freesurfer(self):
-        self.bids_project.run_anat_pipeline()   
+        'Loop over subjects that do not have a fs dir and run fs'
+        issues = self.bids_project.issues
+        freesurfer_proclist=[] 
+        for subject, bids_info in self.bids_project.subjects.items():
+            if subject in issues['Freesurfer_notStarted']:
+                print(f'Submitting sbatch job for {subject}')
+                bids_info.proc_freesurfer()
 
 
     def proc_mriprep(self):