Minor adds + cleanup

nih2mne/GUI/qa_bids_gui.py

@@ -678,6 +678,8 @@ def subject_qa_POPUP(bids_info, text_item='Select'):
         [sg.Text(f'{bids_info}')],                 
         # [sg.Listbox(data, size=(20,5), key='SELECTED')],
         [sg.Button('Plot MEG',key='-PLOT_MEG-'), sg.Combo(bids_info.meg_list, key='-MEG_SELECTION-')],
+
+        [sg.Button('Process Freesurfer', key='-PROC_FS-')]
     ]
     window = sg.Window('POPUP', layout).Finalize()
     meg_selection = None

nih2mne/GUI/qt_gui.py

@@ -7,7 +7,18 @@
 
 TODO -- 
 check the MEG datasets and assess bad subjs data (bad chans etc)
-launch single subject check from push button 
+
+Layout:
+    BIDS_project_window: 
+        Freesurfer - Run all outstanding freesurfer processing
+        MRIprep - Run all mri preprocessing on outstanding subjects
+        MEGNET - not implemented currently
+        Next/Prev - Page Numbers
+    Subject_Tile: 
+        BIDS_root lookup
+        QA file - QA-s the MEG tasks per subject
+    Subject_GUI: 
+        Subject specific parameters.  Summary+Triax+3Dcoreg+MEG plotting
 
 """
 
@@ -21,6 +32,7 @@
 import numpy as np
 from nih2mne.utilities.montages import montages
 from nih2mne.dataQA.qa_config_reader import qa_dataset, read_yml
+import glob
 
 
 
@@ -271,6 +283,17 @@ def setup_full_layout(self):
         self.b_task_chooser.addItems(self.task_set)
         self.b_task_chooser.currentIndexChanged.connect(self.filter_task_qa_vis)
         top_buttons_layout.addWidget(self.b_task_chooser)
+        self.b_out_project_chooser = QComboBox()
+        #Add Project output directory
+        # tmp_ = glob.glob('*', root_dir=op.join(self.bids_project.bids_root, 'derivatives'))
+        # derivatives_dirs = [i for i in tmp_ if op.isdir(op.join(self.bids_project.bids_root, 'derivatives', i))]
+        # for i in ['freesurfer', 'megQA']: 
+        #     if i in derivatives_dirs: derivatives_dirs.remove(i)
+        # self.b_out_project_chooser.addItems(derivatives_dirs)
+        # top_buttons_layout.addWidget(self.b_out_project_chooser)
+
+
+
         main_layout.addLayout(top_buttons_layout)
 
         # Add Subject Chooser Grid Layer

nih2mne/dataQA/qa_config_reader.py

@@ -51,20 +51,3 @@ def qa_dataset(raw, task_type=None, qa_dict=None):
 
 
 
-
-
-
-
-
-
-
-#%% Testing
-def test_yaml_read():
-    from nih2mne.dataQA.qa_config_reader import read_yml
-    import nih2mne
-    fname = op.join(nih2mne.__path__[0], 'dataQA', 'config_template.yml')
-    dat = read_yml(fname)    
-    assert dat['airpuff']['stim']==425
-    assert dat['airpuff']['missingstim'] ==75
-    assert 'haririhammer' in dat.keys()
-