changed how successfull subjects are logged - now, instead of logging…

… the entire filepath of their ICA+FIX output, just log subject ID only. Logging entire filepath causes problems in censor+truncate script
nih-fmrif · Apr 8, 2021 · 5194f4a · 5194f4a
1 parent 131b823
commit 5194f4a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/data_prep/support_scripts/stage_3/verify_icafix_outputs.sh b/data_prep/support_scripts/stage_3/verify_icafix_outputs.sh
@@ -42,7 +42,7 @@ do
     FILE=$DCAN_REPROC/$line/ses-baselineYear1Arm1/files/MNINonLinear/Results/fix_proc/task-rest_concat_hp2000_clean.nii.gz
     if test -f "$FILE"; then
         # record all subjects that DO HAVE final ICA+FIX output (store their path to the file)
-        echo "$FILE" >> $STAGE_3_OUT/ICAFIX_SUCCESS.txt
+        echo "$line" >> $STAGE_3_OUT/ICAFIX_SUCCESS.txt
     else
         # record all subjects that DO NOT HAVE final ICA+FIX output (store subject ID)
         echo "$line" >> $STAGE_3_OUT/tmp_nofile.txt