add cellType list validation rule (#98)

nf-osi · Dec 29, 2021 · cbf67ed · cbf67ed
1 parent 92d5cd4
commit cbf67ed
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Showing 2 changed files with 4 additions and 17 deletions.
diff --git a/NF.csv b/NF.csv
@@ -192,7 +192,7 @@ tissue,A tissue is a mereologically maximal collection of cells that together pe
 platform,"A sequencing platform, microscope, spectroscope/plate reader, or other platform for collecting data. ","HiSeq3000, HiSeq2500, HiSeq4000, NextSeq500, HiSeq2000, MiSeq, Zeiss LSM 980, Affy5.0, Affy6.0, PacBioRSII, GAIIx, Illumina_HumanOmni1-Quadv1.0, Illumina_1M, Illumina_h650, Illumina_Omni2pt5M, Illumina_Omni5M, Illumina MouseWG-6 v2.0 expression beadchip, Perlegen300Karray, Agilent44Karray, IlluminaWholeGenomeDASL, IlluminaHumanHap300, NanostringnCounter, LTQOrbitrapXL, IlluminaHumanMethylation450, Illumina Infinium MethylationEPIC BeadChip, AffymetrixU133AB, Affymetrix Human Gene 1.0 ST Array, AffymetrixU133Plus2, HiSeqX, Bionano Irys, Infinium HumanOmniExpressExome, NextSeq 550, NextSeq 1000, NextSeq 2000, PacBio Sequel IIe System, PacBio Sequel II System, NanostringGeoMx, LI-COR Odyssey CLx, Spectramax M Series, Olympus DP80, Orbitrap Fusion Lumos Tribrid, Illumina_NovaSeq_6000",,FALSE,https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=read_group&anchor=platform,experimentalData,,,,platform,Property,,,Platform,,
 isCellLine,Boolean flag indicating whether or not sample source is a cell line. (Note: TRUE = Yes; FALSE = No),"TRUE, FALSE",,FALSE,,experimentalData,,,,isCellLine,DataProperty,,,,,
 isPrimaryCell,Boolean flag indicating whether or not cellType is primary  (Note: TRUE = Yes; FALSE = No),"TRUE, FALSE",,FALSE,,experimentalData,,,,isPrimaryCell,DataProperty,,,,,
-cellType,A cell type is a distinct morphological or functional form of cell.,"Schwann cell precusor, B-lymphocytes, Embryonic stem cells, iPSC, iPSC-derived telencephalic organoids, GABAergic neurons, monocytes, microglia, macrophages, astrocytes, SH-SY5Y, GLUtamatergic neurons, NeuN+, NeuN-, epithelial, epithelial-like, fibroblast, round, lymphoblast, polygonal, CD8+ T-Cells, arachnoid, meningioma, schwannoma, oligodendrocyte, schwann, iPSC-derived neuron, iPSC-derived glia, iPSC-derived astrocytes, monocyte-derived microglia, iPSC-derived neuronal progenitor cell, CD138+, CNON, teratoma",,FALSE,,experimentalData,,,,cellType,DataProperty,,,Cell,,
+cellType,A cell type is a distinct morphological or functional form of cell.,"Schwann cell precusor, B-lymphocytes, Embryonic stem cells, iPSC, iPSC-derived telencephalic organoids, GABAergic neurons, monocytes, microglia, macrophages, astrocytes, SH-SY5Y, GLUtamatergic neurons, NeuN+, NeuN-, epithelial, epithelial-like, fibroblast, round, lymphoblast, polygonal, CD8+ T-Cells, arachnoid, meningioma, schwannoma, oligodendrocyte, schwann, iPSC-derived neuron, iPSC-derived glia, iPSC-derived astrocytes, monocyte-derived microglia, iPSC-derived neuronal progenitor cell, CD138+, CNON, teratoma",,FALSE,,experimentalData,,,list,cellType,DataProperty,,,Cell,,
 isMultiIndividual,Boolean flag indicating whether or not a file has data for multiple individuals  (Note: TRUE = Yes; FALSE = No),"TRUE, FALSE",,TRUE,,experimentalData,,,,isMultiIndividual,DataProperty,,,,,
 isMultiSpecimen,Boolean flag indicating whether or not a file has data for multiple specimens  (Note: TRUE = Yes; FALSE = No),"TRUE, FALSE",,TRUE,,experimentalData,,,,isMultiSpecimen,DataProperty,,,,,
 sex,"Phenotypic expression of chromosomal makeup that defines a study subject as male, female, or other.","Male, Female, Unknown",,FALSE,http://purl.obolibrary.org/obo/NCIT_C28421,experimentalData,,,,sex,Property,,,Sex,,

diff --git a/NF.jsonld b/NF.jsonld
@@ -6425,7 +6425,9 @@
             ],
             "sms:displayName": "cellType",
             "sms:required": "sms:false",
-            "sms:validationRules": []
+            "sms:validationRules": [
+                "list"
+            ]
         },
         {
             "@id": "bts:IsMultiIndividual",
@@ -16014,21 +16016,6 @@
             "sms:required": "sms:false",
             "sms:validationRules": []
         },
-        {
-            "@id": "bts:list",
-            "@type": "rdf:Property",
-            "rdfs:comment": "TBD",
-            "rdfs:label": "list",
-            "schema:domainIncludes": {
-                "@id": "bts:ModelSystemName"
-            },
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "list",
-            "sms:required": "sms:false",
-            "sms:validationRules": []
-        },
         {
             "@id": "bts:TRUE",
             "@type": "rdfs:Class",