nf-test.yml

name: Run nf-test
on:
  push:
    branches:
      # https://docs.renovatebot.com/key-concepts/automerge/#branch-vs-pr-automerging
      - "renovate/**" # branches Renovate creates
  pull_request:
    branches: [master]
  merge_group:
    types: [checks_requested]
    branches: [master]
  workflow_dispatch:
    inputs:
      runners:
        description: "Runners to test on"
        type: choice
        options:
          - "ubuntu-latest"
          - "self-hosted"
        default: "self-hosted"

# Cancel if a newer run is started
concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

env:
  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
  # renovate: datasource=github-releases depName=askimed/nf-test versioning=semver
  NFT_VER: "0.9.2"
  NXF_ANSI_LOG: false
  NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
  NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
  # renovate: datasource=github-releases depName=nextflow/nextflow versioning=semver
  NXF_VER: "24.10.1"

jobs:
  nf-test:
    runs-on: ${{ github.event.inputs.runners || 'self-hosted' }}
    # NOTE I think this is the cleanest way to get them organized
    # process | conda | 1
    # process | conda | 2
    # process | conda | 3
    # process | docker_self_hosted | 1
    # ...
    # workflow | singularity | 3
    name: "${{ matrix.profile }} | ${{ matrix.shard }}"
    # TODO
    # needs: get-number-of-shards
    # if: ${{ fromJSON(needs.get-number-of-shards.outputs.shards) != fromJSON('["1", "0"]') }}
    strategy:
      fail-fast: false
      matrix:
        # NOTE We could split these, but there's probably going to be more process tests than workflow tests, so we're just going to combine them all and bump up the shards for now
        # NOTE The name of the test would be name: "${{ matrix.filter }} | ${{ matrix.profile }} | ${{ matrix.shard }}"
        # filter: [process, workflow]
        profile: [conda, docker_self_hosted, singularity]
        shard: [1, 2, 3, 4, 5]
    env:
      # FIXME Bumping them up to make the transition smooth, then we can throttle them back
      TOTAL_SHARDS: 5
      SENTIEON_LICENSE_MESSAGE: ${{ secrets.SENTIEON_LICENSE_MESSAGE }}
      SENTIEON_ENCRYPTION_KEY: ${{ secrets.SENTIEON_ENCRYPTION_KEY }}
    steps:
      - name: Clean Workspace # Purge the workspace in case it's running on a self-hosted runner
        run: |
          ls -la ./
          rm -rf ./* || true
          rm -rf ./.??* || true
          ls -la ./
      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
        with:
          fetch-depth: 0
      - name: Run nf-test Action
        uses: ./.github/actions/nf-test-action
        with:
          profile: ${{ matrix.profile }}
          shard: ${{ matrix.shard }}
          total_shards: ${{ env.TOTAL_SHARDS }}