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* introduce docs/changelog.md * populate changelog from #1211 Co-authored-by: Pramod Kumbhar <[email protected]>
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# 8.0.0 | ||
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_Release Date_ : 30-04-2021 | ||
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## What's New | ||
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- Dynamic selection of legacy vs modern units using HOC/Python API (**default** : modern) | ||
- Faster reaction-diffusion support | ||
- Initial GPU support using integration of CoreNEURON | ||
- Binary installer for new Apple M1 platform | ||
- Binary wheel distribution for Python 3.9 and Python 2.7 | ||
- Release of NMODL version 0.3 (available as python wheel) | ||
- Versioned documentation available via [nrn.readthedocs.io](https://nrn.readthedocs.io/en/latest/) | ||
- CMake as a primary build system for NEURON and Interviews | ||
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## Breaking Changes | ||
- `h.Section` now interprets positional arguments as `name`, `cell`. Previously positional arguments were interpreted in the other order. (Calling it with keyword arguments is unchanged.) | ||
- For 3d reaction-diffusion simulations, the voxelization and segment mapping algorithms have been adjusted, especially around the soma. Voxel indices and sometimes counts will change from previous versions. | ||
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## Deprecations | ||
- Five functions in the `neuron` module: `neuron.init`, `neuron.run`, `neuron.psection`, `neuron.xopen`, and `neuron.quit`. | ||
- Autotools build is deprecated and will be removed in the next release. Use CMake instead. | ||
- Python 2 and Python 3.5 support is deprecated and will be removed in the next release. Use `Python >= 3.6` | ||
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## Bug Fixes | ||
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For the complete list of bug fixes, see the list on the [GitHub here](https://github.com/neuronsimulator/nrn/issues/1211#issuecomment-826919173). | ||
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## Improvements / Other Changes | ||
- Allow for two point (single section) SWC somas | ||
- GitHub Actions and Azure as primary CI systems. Travis CI removed. | ||
- GitHub [Releases](https://github.com/neuronsimulator/nrn/releases) provides full source tarballs, binary installers and python wheels. | ||
- Improved testing and CI infrastructure including GPUs | ||
- [nrn-build-ci](https://github.com/neuronsimulator/nrn-build-ci) repository test nightly builds for Ubuntu 18.04, Ubuntu 20.04, Fedora 32, Fedora 33, CentOS7, CentOS8, Debian Buster (10) and macOS 10.15 platforms. | ||
- Improved integration of CoreNEURON | ||
- Support for recent numpy version | ||
- Various build improvements on Linux, MacOS and HPC platforms | ||
- Documentation from various repositories is consolidated under `nrn` repository | ||
- New releases via Spack and Easybuild package managers | ||
- Fix deadlock when compiling NEURON with AVX-512 | ||
- Add backward-cpp for better backtraces | ||
- NEURON_MODULE_OPTIONS environment variable to pass in nrniv options before `neuron import` | ||
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## Upgrade Steps | ||
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Existing models should work without any changes. In order to upgrade NEURON version you can: | ||
- Use python wheels provided for Linux or Mac OS platform | ||
- Use binary installer provided for windows | ||
- Install from source, preferably using CMake build system | ||
- For new version, it's always a good idea to start over from scratch with nrnivmodl (deleting existing directory like `x86_64`) | ||
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See `Installation` section under [nrn.readthedocs.io/](nrn.readthedocs.io/). In the very rare case that numerical differences exist, check selection of legacy vs modern units. | ||
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## Contributors | ||
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See the list of contributors on respective GitHub projects: | ||
- NEURON : https://github.com/neuronsimulator/nrn/graphs/contributors | ||
- CoreNEURON : https://github.com/BlueBrain/CoreNeuron/graphs/contributors | ||
- NMODL : https://github.com/BlueBrain/nmodl/graphs/contributors | ||
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## Feedback / Help | ||
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- Software related issues should be reported on the GitHub : https://github.com/neuronsimulator/nrn/issues/new/choose | ||
- For developing models and any scientific questions, see NEURON forum : https://www.neuron.yale.edu/phpBB/ | ||
- If you want to participate / contribute to the development of NEURON, you can join monthly developers meeting : https://github.com/neuronsimulator/nrn/wiki |
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