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increased precision of metrics in csv files, added code for ranking #40

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FabianIsensee
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Ranking code

increased precision of metrics in csv files to prevent ties as much as possible, added ranking code

see ranking.py

Also added nnUNet_summary.csv to highlight how the ranking works. Feel free to ask questions :-)

Checklist

  • Merged latest master
  • [NOPE] Updated version number in README.md
  • [NOPE ] Added changes to changelog.md
  • [NOPE ] Updated version number in setup.py
  • [NOPE] (only when updating dataset) Ran annotation.import to completion
  • [NOPE] (only when updating dataset) Updated Surface Dice tolerances in labels.py (execute sample_segmentations.py, and
    after that compute_tolerances.py. Then put the new values in. Do not re-use sampled segmentations from prior dataset versions!)

If you want me to increase the version number please let me know

Best,
Fabian

@FabianIsensee
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I also updated the docker instructions and added a dockerfile + inference script for the nnunet cascade

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