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Update Model - Cause of Death Source #423

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Jun 13, 2024
Merged

Update Model - Cause of Death Source #423

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5ad8a04
Update Model - Cause of Death Source
PozhidayevaDarya Jun 12, 2024
fd57935
GitHub Action: convert *.model.csv to *.model.jsonld
github-actions[bot] Jun 12, 2024
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2 changes: 1 addition & 1 deletion HTAN.model.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -536,7 +536,7 @@ Country of Residence,Country of Residence at enrollment,"Afghanistan,Albania,Alg
Age Is Obfuscated,The age of the patient has been modified for compliance reasons. The actual age differs from what is reported. Other date intervals for this patient may also be modified.,"true, false",,,FALSE,Demographics,,,
Year Of Birth,Numeric value to represent the calendar year in which an individual was born.,,,,FALSE,Demographics,,https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=2896954&version=1.0,
Cause of Death,The cause of death,"Cancer Related, Cardiovascular Disorder NOS, End-stage Renal Disease, Infection, Not Cancer Related, Renal Disorder NOS, Spinal Muscular Atrophy, Surgical Complications, Toxicity, Not Reported, unknown, Not Applicable",,,TRUE,Demographics,,https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=2554674&version=3.0,
Cause of Death Source,The text term used to describe the source used to determine the patient's cause of death.,"Autopsy, Death Certificate, Medical Record, Social Security Death Index, unknown, Not Reported",,,FALSE,Demographics,,,
Cause of Death Source,The text term used to describe the source used to determine the patient's cause of death.,"Autopsy, Death Certificate, Medical Record, Social Security Death Index, Obituary, unknown, Not Reported",,,FALSE,Demographics,,,
Days to Death,Number of days between the date used for index and the date from a person's date of death represented as a calculated number of days. If not applicable please enter 'Not Applicable',,,,FALSE,Demographics,,https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=6154724&version=1.0,regex match \d+$|Not\sApplicable$|unknown$
Occupation Duration Years,The number of years a patient worked in a specific occupation.,,,,FALSE,Demographics,,https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=2435424&version=1.0,
Premature At Birth,The yes/no/unknown indicator used to describe whether the patient was premature (less than 37 weeks gestation) at birth.,"Yes, No, unknown, Not Reported",,,FALSE,Demographics,,https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=6010765&version=1.0,
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32 changes: 26 additions & 6 deletions HTAN.model.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -54880,9 +54880,6 @@
{
"@id": "bts:PrecancerCase"
},
{
"@id": "bts:CauseofDeathSource"
},
{
"@id": "bts:AlcoholType"
},
Expand Down Expand Up @@ -54967,6 +54964,9 @@
{
"@id": "bts:FiducialMarker"
},
{
"@id": "bts:CauseofDeathSource"
},
{
"@id": "bts:AlcoholIntensity"
},
Expand Down Expand Up @@ -55530,9 +55530,6 @@
{
"@id": "bts:HistoryofChronicUVExposure"
},
{
"@id": "bts:CauseofDeathSource"
},
{
"@id": "bts:AlcoholType"
},
Expand Down Expand Up @@ -55593,6 +55590,9 @@
{
"@id": "bts:FiducialMarker"
},
{
"@id": "bts:CauseofDeathSource"
},
{
"@id": "bts:AlcoholIntensity"
},
Expand Down Expand Up @@ -63205,6 +63205,9 @@
{
"@id": "bts:SocialSecurityDeathIndex"
},
{
"@id": "bts:Obituary"
},
{
"@id": "bts:Unknown"
},
Expand Down Expand Up @@ -68079,6 +68082,23 @@
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Obituary",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Obituary",
"rdfs:subClassOf": [
{
"@id": "bts:CauseofDeathSource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "Obituary",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Bachelor'sdegree",
"@type": "rdfs:Class",
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