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multiplex cite-seq added to data model. #410

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merged 7 commits into from
Jun 6, 2024
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Gibbsdavidl
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Four levels were added plus five new features (at end of model):

-Associated mRNA Library Data File ID
-Single Cell Barcode Method Applied
-Feature Barcode Library Type
-Barcode Folder Synapse ID
-Barcode Folder File List

some higher level intermediate features were used:

-read1
-read2
-cDNA

For example: read1 contains "Cell Barcode and UMI" which in turn contains six other features related to barcodes.

Four levels were added plus five new features (at end of model):
-Associated mRNA Library Data File ID
-Single Cell Barcode Method Applied
-Feature Barcode Library Type
-Barcode Folder Synapse ID
-Barcode Folder File List

some higher level intermediate features were used:
-read1
-read2
-cDNA

read1 contains "Cell Barcode and UMI" which in turn contains six other features related to barcodes.
Gibbsdavidl and others added 3 commits May 28, 2024 16:42
@adamjtaylor adamjtaylor requested a review from aditigopalan May 29, 2024 11:26
@adamjtaylor adamjtaylor linked an issue May 29, 2024 that may be closed by this pull request
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@Gibbsdavidl I have a few questions on this still, but potentially we could get out in our data model release today as is and refine as needed

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@adamjtaylor adamjtaylor merged commit 596d0e7 into main Jun 6, 2024
@adamjtaylor adamjtaylor deleted the add-multiplex-cite-seq branch June 6, 2024 11:43
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Implement minimal template for multiplex-CITE-seq assay
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