Build Dependencies Table #2
Workflow file for this run
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name: Build Dependencies Table | |
on: | |
release: | |
types: [published] | |
jobs: | |
update-table: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.8 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install requests pandas | |
- name: Fetch attribute table | |
run: | | |
python - <<EOF | |
import requests | |
import pandas as pd | |
url = "https://schematic.api.sagebionetworks.org/v1/ui/" # Endpoint URL | |
jsonld_url = "https://raw.githubusercontent.com/ncihtan/data-models/main/HTAN.model.jsonld" | |
response = requests.get(jsonld_url) | |
response.raise_for_status() | |
model_jsonld = response.json() | |
response = requests.post(url, json=model_jsonld) | |
response.raise_for_status() | |
attribute_table = response.json() # Adjust this line based on the actual response format | |
df = pd.DataFrame(attribute_table) | |
df.to_csv('HTAN.dependencies.csv', index=False) | |
EOF | |
- name: Commit changes | |
run: | | |
git config --global user.name "github-actions[bot]" | |
git config --global user.email "github-actions[bot]@users.noreply.github.com" | |
git add HTAN.dependencies.csv | |
git commit -m "Update HTAN.dependencies.csv with the latest attribute table" | |
- name: Create Pull Request | |
uses: aditigopalan/create-pull-request@v3 | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
commit-message: "Update HTAN.dependencies.csv" | |
branch: update-attribute-table | |
title: "Update HTAN.dependencies.csv" | |
body: "This PR updates HTAN.dependencies.csv with the latest attribute table." |