The software for the Microarray pipelines and workflows program as a whole are distributed under the GNU General Public License version 3.0 and calls other open source software components. The following is a list of these components:
- R, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991, and Version 3, 29 June 2007", https://www.r-project.org/Licenses/
- DT, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/rstudio/DT/blob/main/LICENSE
- dplyr, MIT License Copyright (c) 2022 dplyr authors, https://github.com/tidyverse/dplyr/blob/main/LICENSE.md
- stringr, MIT License Copyright (c) 2020 stringr authors, https://github.com/tidyverse/stringr/blob/main/LICENSE.md
- R.utils, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://github.com/HenrikBengtsson/R.utils/blob/2.12.2/DESCRIPTION
- oligo, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://www.bioconductor.org/packages/3.14/bioc/html/oligo.html
- limma, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://bioconductor.org/packages/3.14/bioc/html/limma.html
- glue, MIT License Copyright (c) 2021 glue authors, https://github.com/tidyverse/glue/blob/v1.6.2/LICENSE.md
- biomaRt, The Artistic License 2.0, https://bioconductor.org/packages/3.14/bioc/manuals/biomaRt/man/biomaRt.pdf
- matrixStats, The Artistic License 2.0, https://github.com/HenrikBengtsson/matrixStats/blob/develop/DESCRIPTION
- statmod, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/cran/statmod/blob/1.5.0/DESCRIPTION
- Singularity, "The BSD 3-clause License (MIT) Copyright (c) 2015-2017, Gregory M. Kurtzer. Copyright (c) 2016-2017, The Regents of the University of California. Copyright (c) 2017, SingularityWare, LLC. Copyright (c) 2018-2022, Sylabs, Inc.", https://docs.sylabs.io/guides/3.9/user-guide/license.html
- dp_tools, The MIT License (MIT) Copyright (c) 2022 Jonathan Oribello, https://github.com/J-81/dp_tools/blob/main/LICENSE
- Quarto, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://quarto.org/license.html
- tibble, MIT License Copyright (c) 2019 RStudio and others, https://tibble.tidyverse.org/LICENSE.html
- Nextflow, "Apache License Version 2.0, January 2004", https://github.com/nextflow-io/nextflow/blob/master/COPYING
- python, The PSF LICENSE AGREEMENT Copyright (c) 2001-2022 Python Software Foundation, https://docs.python.org/3/license.html#psf-license-agreement-for-python-release
- pandas, The BSD 3-clause License, https://github.com/pandas-dev/pandas/blob/main/LICENSE
- ggplot2, MIT License Copyright (c) 2020 ggplot2 authors, https://ggplot2.tidyverse.org/LICENSE.html
Licenses for the 3rd party open source software utilized in the Microarray pipelines and workflows can be found in the Affymetrix and Agilent 1-channel 3rd_Party_Licenses sub-directories on the GeneLab_Data_Processing GitHub repository landing page.
Copyright © 2024 United States Government as represented by the National Aeronautics and Space Administration (NASA) Administrator.
Warranties and Liabilities: THE NASA “GENELAB MICROARRAY PROCESSING PIPELINE AND WORKFLOWS” PROGRAM IS PROVIDED “AS IS” WITHOUT ANY WARRANTY OF ANY KIND, EITHER EXPRESSED, IMPLIED, OR STATUTORY, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTY THAT THE NASA “GENELAB MICROARRAY PROCESSING PIPELINE AND WORKFLOWS” PROGRAM WILL CONFORM TO SPECIFICATIONS, ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR FREEDOM FROM INFRINGEMENT, ANY WARRANTY THAT THE NASA “GENELAB MICROARRAY PROCESSING PIPELINE AND WORKFLOWS” PROGRAM WILL BE ERROR FREE, OR ANY WARRANTY THAT DOCUMENTATION, IF PROVIDED, WILL CONFORM TO THE NASA “GENELAB MICROARRAY PROCESSING PIPELINE AND WORKFLOWS” PROGRAM. THIS AGREEMENT DOES NOT, IN ANY MANNER, CONSTITUTE AN ENDORSEMENT BY GOVERNMENT AGENCY OR ANY PRIOR RECIPIENT OF ANY RESULTS, RESULTING DESIGNS, HARDWARE, SOFTWARE PRODUCTS OR ANY OTHER APPLICATIONS RESULTING FROM USE OF THE NASA “GENELAB MICROARRAY PROCESSING PIPELINE AND WORKFLOWS” PROGRAM. FURTHER, NASA DISCLAIMS ALL WARRANTIES AND LIABILITIES REGARDING THIRD-PARTY SOFTWARE, IF PRESENT IN THE ORIGINAL SOFTWARE, AND DISTRIBUTES IT “AS IS.”
Waiver: RECIPIENT AGREES TO WAIVE ANY AND ALL CLAIMS AGAINST THE UNITED STATES GOVERNMENT, ITS CONTRACTORS AND SUBCONTRACTORS, AS WELL AS ANY PRIOR RECIPIENT. RECIPIENT'S SOLE REMEDY FOR ANY SUCH MATTER SHALL BE THE IMMEDIATE, UNILATERAL TERMINATION OF THIS AGREEMENT.
The “GeneLab Microarray Processing Pipelines and Workflows” software also makes use of the following 3rd party Open Source software, released under the licenses indicated above. A complete listing of 3rd Party software notices and licenses made use of in “GeneLab Microarray Processing Pipelines and Workflows” can be found in the Microarray_Affymetrix_3rd_Party_Software.md and Microarray_Agilent_1_Channel_3rd_Party_Software.md files as indicated above.
Developed by:
Jonathan Oribello
Maintained by:
Crystal Han
Alexis Torres