simuPOP is a general-purpose individual-based forward-time population genetics simulation environment. Please refer to the simuPOP homepage
http://simupop.sourceforge.net
for details.
simuPOP is distributed under a GPL3 license. Starting from simuPOP 1.1.8, it supports only Python 3 (3.5 and up) on windows, mac and Linux systems.
simuPOP is part of the conda-forge, if you use Anaconda Python 3, you can install simuPOP with command
conda config --add channels conda-forge
conda install simuPOP
The first command only needs to be run only so you can upgrade simuPOP later using command
conda install simuPOP --upgrade
If you would like to use simuPOP with Python 2.5 - 2.7, please compile simuPOP from source, using either simuPOP 1.1.7,
or the Python 2.x branch of simuPOP. Note that features that has been marked deprecated
(e.g. simuOpt.Param
, simuPOP.plotting
) in simuPOP 1.1.7 and earlier are removed in simuPOP 1.1.8+, so simuPOP 1.1.7 would be your best
bet for the execution of legendary simuPOP scripts.