New lymphgen feature extraction and visualization #184

	name: GAMBLR build check

	on:
	pull_request:
	branches: [master]

	jobs:
	build:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	R_KEEP_PKG_SOURCE: yes

	steps:
	- name: Checkout code
	uses: actions/checkout@v3

	- name: Setup Conda
	uses: actions/setup-python@v2
	with:
	python-version: 3.11

	- name: Create conda environment
	uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: dependencies
	channels: anaconda,conda-forge,defaults
	python-version: 3.11
	auto-activate-base: false
	environment-file: envs/dependencies.yaml

	- name: Build package
	run:
	Rscript -e "devtools::install()"

	- name: Check package
	run:
	Rscript -e "devtools::check(vignettes = FALSE, args = '--no-examples')"

	- name: Upload check results
	if: failure()
	uses: actions/upload-artifact@main
	with:
	name: ${{ runner.os }}-r${{ matrix.config.r }}-results
	path: check

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