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ukb_sim_external_LD_snakemake_submitter.sh
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ukb_sim_external_LD_snakemake_submitter.sh
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#!/bin/bash
#
#SBATCH --job-name=ukb_sim_sm
#SBATCH --ntasks=1
#SBATCH --partition=compute,bigmem
#SBATCH --time=336:00:00
#SBATCH --mem=2gb
#SBATCH --output=run/log/ukb_caucasian_white_british_unrel_100000_external_LD_equal_effects_indep_resid.%j.out
#SBATCH --error=run/log/ukb_caucasian_white_british_unrel_100000_external_LD_equal_effects_indep_resid.%j.err
#SBATCH --mail-type=fail
#SBATCH [email protected]
source /data2/morgante_lab/fabiom/software/miniconda3/etc/profile.d/conda.sh
source /data2/morgante_lab/fabiom/software/miniconda3/etc/profile.d/mamba.sh
conda activate mr_mash_rss_proj
#--dag | display | dot
#-p -n \
## test dag generation
# snakemake -p -n -s ukb_sim_external_LD_snakefile \
# --configfile ukb_sim_external_LD_equal_effects_indep_resid.yaml
#--rerun-triggers mtime \
#--configfile ukb_sim_external_LD_equal_effects_50000causal_indep_resid.yaml
#--configfile ukb_sim_external_LD_trait_1_only_effects_indep_resid.yaml
#--configfile ukb_sim_external_LD_blocks_shared_effects_indep_resid.yaml
#--configfile ukb_sim_external_LD_equal_effects_10traits_indep_resid.yaml
#--configfile ukb_sim_external_LD_equal_effects_low_pve_indep_resid.yaml
snakemake \
-s ukb_sim_external_LD_snakefile \
--profile slurm \
--latency-wait 120 \
-k \
--configfile ukb_sim_external_LD_equal_effects_indep_resid.yaml
#--configfile ukb_sim_external_LD_equal_effects_low_pve_indep_resid.yaml
#--configfile ukb_sim_external_LD_blocks_shared_effects_indep_resid.yaml
#--configfile ukb_sim_external_LD_trait_1_only_effects_indep_resid.yaml
#--configfile ukb_sim_external_LD_equal_effects_50000causal_indep_resid.yaml
#--configfile ukb_sim_external_LD_equal_effects_10traits_indep_resid.yaml