update or tweak pkg to run shiny application via Docker #10
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| name: build | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| container: rocker/tidyverse:4.0.0-ubuntu18.04 | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Install dependencies | |
| run: | | |
| apt-get update | |
| apt-get install -y --no-install-recommends \ | |
| apt-utils \ | |
| libglpk-dev \ | |
| libcurl4-openssl-dev \ | |
| libxml2-dev \ | |
| libssl-dev && \ | |
| apt-get clean && \ | |
| rm -rf /var/lib/apt/lists/* | |
| - name: Install bieulergy | |
| run: | | |
| install.packages('devtools') | |
| devtools::install('.', dependencies=TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args=c("--no-manual", "--no-build-vignettes"), build_args=c("--no-build-vignettes"), error_on="error", check_dir="check") | |
| shell: Rscript {0} | |
| # Push docker image to docker hub | |
| #- uses: docker/build-push-action@v1 | |
| # with: | |
| # username: ${{ secrets.DOCKER_USERNAME }} | |
| # password: ${{ secrets.DOCKER_PASSWORD }} | |
| # repository: montilab/bieulergy | |
| # tag_with_ref: true | |
| # tag_with_sha: true | |
| # tags: latest | |
| #- name: Install pkgdown and vignette dependencies | |
| # run: | | |
| # install.packages('pkgdown') | |
| # install.packages('reactable') | |
| # install.packages('biomaRt', repos=BiocManager::repositories()) | |
| # shell: Rscript {0} | |
| #- name: Build pkgdown | |
| # run: | | |
| # PATH=$PATH:$HOME/bin/ Rscript -e 'pkgdown::build_site("."); file.copy("media", "docs", recursive=TRUE)' | |
| # deploy needs rsync? Seems so. | |
| #- name: Install deploy dependencies | |
| # run: | | |
| # apt-get update | |
| # apt-get -y install rsync | |
| #- name: Deploy 🚀 | |
| # uses: JamesIves/github-pages-deploy-action@releases/v3 | |
| # with: | |
| # ACCESS_TOKEN: ${{ secrets.ACCESS_TOKEN }} | |
| # BRANCH: gh-pages # The branch the action should deploy to. | |
| # FOLDER: docs # The folder the action should deploy. |