Add curategpt scoring #55
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…ate_standardised_results in order for it to substitute ontogpts grounding
…vant TODOs in extended scoring with manual paths...
…explained in documentation. Tested a few times. Also on the fly removed num_ppkt related bug
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The collection and further curategpt things will be documented, but nothing will be provided out of the box (as of now). Installing curategpt will be the user's responsibility.. |
Edited error introduced during manual merge
Maybe this may save up some space and deal with https://github.com/monarch-initiative/pheval.llm/actions/runs/11918215693/job/33215129156?pr=55#step:6:71
Maybe poetry install is not needed at all, since tox recreates its own environment...?
Forgot to install tox, trying now with pip, alternatively try later with poetry, but not doing a full install
add missing coverage package
Try having tox do everything
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The extent to which CI testing has changed has nothing to do anymore with curategpt grounding (rather than scoring, that was a misnomer), I will merge now into main in its current state and work on testing and gh actions someplace else |
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Add the possibility of carrying out scoring like in the short_letter branch, i.e. with exact lexical matching and then with curategpt. Still need to figure out paths, curategpt versioning, todos in the extended_scoring.py file, and what to do with the huge collection (about 1GB).