pull analysis file from short letter and rm file checked in by accident

monarch-initiative · Sep 5, 2024 · ef2e9c2 · ef2e9c2
1 parent 2913dc7
commit ef2e9c2
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diff --git a/src/malco/analysis/check_shelved_cache.py b/src/malco/analysis/check_shelved_cache.py
diff --git a/src/malco/analysis/count_grounding_failures.py b/src/malco/analysis/count_grounding_failures.py
@@ -0,0 +1,19 @@
+# Quick check how often the grounding failed
+import pandas as pd
+mfile = "outputdir_all_2024_07_04/en/results.tsv"
+
+df = pd.read_csv(
+        mfile, sep="\t" #, header=None, names=["description", "term", "label"]
+    )
+
+terms = df["term"]
+counter = 0
+grounded = 0
+for term in terms:
+    if term.startswith("MONDO"):
+        grounded += 1
+    else:
+        counter += 1
+
+print(counter)
+print(grounded)