Merge pull request #269 from monarch-initiative/release202304052

update release files
monarch-initiative · Apr 5, 2023 · 3b2f55e · 3b2f55e
2 parents 062b0eb + 4c41278
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diff --git a/docs/metrics/doid.md b/docs/metrics/doid.md
@@ -2,16 +2,16 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-03-29/doid.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-04-05/doid.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
 | Annotation properties | 25 |
-| Axioms | 106474 |
-| Logical axioms | 15508 |
-| Classes | 12738 |
+| Axioms | 106567 |
+| Logical axioms | 15531 |
+| Classes | 12754 |
 | Object properties | 2 |
 | Data properties | 0 |
 | Individuals | 0 |
@@ -32,10 +32,10 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 78203 |
+| AnnotationAssertion | 78257 |
 | DisjointClasses | 26 |
-| Declaration | 12763 |
-| SubClassOf | 15482 |
+| Declaration | 12779 |
+| SubClassOf | 15505 |
 
 
 #### Entity namespaces: axiom counts by namespace
@@ -44,17 +44,17 @@
 | ------ | ----- |
 | oboInOwl | 11 |
 | owl | 2 |
-| DOID | 11217 |
-| HP | 106 |
+| DOID | 11225 |
+| HP | 108 |
 | xsd | 1 |
 | CL | 60 |
 | skos | 5 |
 | BFO | 2 |
 | rdfs | 2 |
 | FOODON | 24 |
-| NCBITaxon | 318 |
+| NCBITaxon | 319 |
 | TRANS | 13 |
-| SYMP | 301 |
+| SYMP | 306 |
 | dc11 | 2 |
 | rdf | 1 |
 | CHEBI | 90 |
@@ -70,7 +70,7 @@
 
 | Metric | Value |
 | ------ | ----- |
-| Class | 43914 |
+| Class | 43976 |
 
 
 More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).

diff --git a/docs/metrics/icd10cm.md b/docs/metrics/icd10cm.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-03-29/icd10cm.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-04-05/icd10cm.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10who.md b/docs/metrics/icd10who.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-03-29/icd10who.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-04-05/icd10who.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ncit.md b/docs/metrics/ncit.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-03-29/ncit.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-04-05/ncit.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/omim.md b/docs/metrics/omim.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-03-29/omim.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-04-05/omim.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ordo.md b/docs/metrics/ordo.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-03-29/ordo.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-04-05/ordo.owl
 
 ### Entities and axioms
 

diff --git a/docs/reports/mapped_deprecated.md b/docs/reports/mapped_deprecated.md
@@ -4,7 +4,7 @@
 | [ORDO](./mapped_deprecated_ordo.md)         |                       574 |
 | [OMIM](./mapped_deprecated_omim.md)         |                        47 |
 | [NCIT](./mapped_deprecated_ncit.md)         |                        33 |
-| [DOID](./mapped_deprecated_doid.md)         |                        26 |
+| [DOID](./mapped_deprecated_doid.md)         |                        28 |
 | [ICD10WHO](./mapped_deprecated_icd10who.md) |                         0 |
 | [ICD10CM](./mapped_deprecated_icd10cm.md)   |                         0 |
 

diff --git a/docs/reports/mapped_deprecated_doid.md b/docs/reports/mapped_deprecated_doid.md
@@ -10,6 +10,7 @@
 | MONDO:0002063 | DOID:1634    | MONDO:equivalentObsolete |
 | MONDO:0002202 | DOID:2088    | MONDO:equivalentObsolete |
 | MONDO:0002203 | DOID:2089    | MONDO:equivalentObsolete |
+| MONDO:0002444 | DOID:2848    | MONDO:equivalentObsolete |
 | MONDO:0002633 | DOID:338     | MONDO:equivalentObsolete |
 | MONDO:0003495 | DOID:5532    | MONDO:equivalentObsolete |
 | MONDO:0003723 | DOID:5996    | MONDO:equivalentObsolete |
@@ -21,6 +22,7 @@
 | MONDO:0008060 | DOID:0080088 | MONDO:equivalentObsolete |
 | MONDO:0009679 | DOID:0110631 | MONDO:equivalentObsolete |
 | MONDO:0010936 | DOID:0060208 | MONDO:equivalentObsolete |
+| MONDO:0010975 | DOID:0110071 | MONDO:equivalentObsolete |
 | MONDO:0011010 | DOID:0050819 | MONDO:equivalentObsolete |
 | MONDO:0011910 | DOID:0110302 | MONDO:equivalentObsolete |
 | MONDO:0012215 | DOID:0110300 | MONDO:equivalentObsolete |

diff --git a/docs/reports/unmapped.md b/docs/reports/unmapped.md
@@ -3,10 +3,10 @@
 |:-----------------------------------|:------------|:---------------|:-----------------|:--------------------------|:------------------------------------------|:--------------------------|:----------------------------|:--------------------------|
 | [ICD10WHO](./unmapped_icd10who.md) | 12,542      | 0              | 0                | 0                         | 12,542                                    | 18                        | 12,524                      | 99.9%                     |
 | [ICD10CM](./unmapped_icd10cm.md)   | 95,847      | 15,452         | 0                | 0                         | 80,395                                    | 1,161                     | 79,234                      | 98.6%                     |
-| [DOID](./unmapped_doid.md)         | 13,689      | 2,626          | 2,473            | 2,447                     | 11,062                                    | 10,287                    | 775                         | 7.0%                      |
 | [NCIT](./unmapped_ncit.md)         | 174,300     | 148,488        | 5,055            | 5,022                     | 20,757                                    | 7,033                     | 13,724                      | 66.1%                     |
-| [OMIM](./unmapped_omim.md)         | 28,750      | 18,958         | 1,353            | 1,306                     | 8,439                                     | 8,214                     | 225                         | 2.7%                      |
+| [DOID](./unmapped_doid.md)         | 13,699      | 2,628          | 2,475            | 2,447                     | 11,070                                    | 10,506                    | 564                         | 5.1%                      |
 | [ORDO](./unmapped_ordo.md)         | 10,866      | 1,718          | 1,418            | 844                       | 9,148                                     | 8,999                     | 149                         | 1.6%                      |
+| [OMIM](./unmapped_omim.md)         | 28,750      | 18,958         | 1,353            | 1,306                     | 8,439                                     | 8,374                     | 65                          | 0.8%                      |
 
 `Ontology`: Name of ontology  
 `Tot terms`: Total terms in ontology