A Java library to map tests results from LOINC codes to
Human Phenotype Ontology. terms.
For details, please see Zhang et al. (2012) Semantic integration of clinical laboratory tests from electronic
health records for deep phenotyping and biomarker discovery. NPJ Digit Med. 2019;2:32.
The LOINC to HPO mapping file is available at the loinc2hpoAnnotation repository.
loinc2hpo is intended to be used as a software library. Selected functions are demonstrated in the CLI app.
Please refer to http://loinc2hpo.readthedocs.io/en/latest/.
We are developing a separate app that will specialize in one functionality of this app - converting FHIR observations into HPO terms. The new app will be coded with the Spring framework and we strive to achieve enterprise-level quality. Please refer to the app with the following link: https://github.com/OCTRI/fhir2hpo
We gratefully acknowledge funding by NCATS (CD2H project, A NATIONAL CENTER FOR DIGITAL HEALTH INFORMATICS INNOVATION), 1U24TR002306