Move existing biogrid ingest files to proper places

monarch-initiative · Oct 24, 2024 · 1de69fb · 1de69fb
1 parent 2307fd1
commit 1de69fb
Show file tree

Hide file tree

Showing 6 changed files with 14 additions and 9 deletions.
diff --git a/...ch_ingest/ingests/biogrid/biogrid_util.py → src/biogrid_ingest/biogrid_util.py b/...ch_ingest/ingests/biogrid/biogrid_util.py → src/biogrid_ingest/biogrid_util.py
diff --git a/src/biogrid_ingest/download.yaml b/src/biogrid_ingest/download.yaml
@@ -3,5 +3,5 @@
 ### The configuration is used by `kghub-downloader`.
 ### For more information, see https://github.com/monarch-initiative/kghub-downloader
 ---
-- url: https://raw.githubusercontent.com/monarch-initiative/cookiecutter-monarch-ingest/main/data/example_data.tsv
-  local_name: data/example_data.tsv
+- url: https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-4.4.226/BIOGRID-ALL-4.4.226.mitab.zip
+  local_name: data/biogrid/biogrid.mitab.zip
diff --git a/src/biogrid_ingest/metadata.yaml b/src/biogrid_ingest/metadata.yaml
@@ -0,0 +1,12 @@
+# Metadata for the project
+# Uncomment and edit the fields you want to include in the metadata
+# See metadata properties at https://koza.monarchinitiative.org/Ingests/source_config/
+name: 'biogrid'
+
+ingest_title: 'BioGRID'
+ingest_url: 'https://thebiogrid.org/'
+description: 'BioGRID: Database of Protein, Genetic and Chemical Interactions'
+rights: 'https://wiki.thebiogrid.org/doku.php/partners'
+
+# source: 'Possibly replaced by provided_by'
+provided_by: 'biogrid'
diff --git a/...monarch_ingest/ingests/biogrid/biogrid.py → src/biogrid_ingest/transform.py b/...monarch_ingest/ingests/biogrid/biogrid.py → src/biogrid_ingest/transform.py
diff --git a/...narch_ingest/ingests/biogrid/biogrid.yaml → src/biogrid_ingest/transform.yaml b/...narch_ingest/ingests/biogrid/biogrid.yaml → src/biogrid_ingest/transform.yaml
diff --git a/src/monarch_ingest/ingests/biogrid/metadata.yaml b/src/monarch_ingest/ingests/biogrid/metadata.yaml