Merge pull request #258 from molgenis/fix/depthIndicator

Fix #257 Do not show read depth warning indicator if read depth is null
molgenis · Mar 20, 2023 · 57fce2a · 57fce2a
2 parents 33004c0 + e0b5b84
commit 57fce2a
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/src/components/VariantSampleTable.tsx b/src/components/VariantSampleTable.tsx
@@ -42,7 +42,7 @@ export const VariantSampleTable: Component<{
                           allelicBalance={
                             props.record.data.s[props.samples[i()].index]["VIAB"] as number | undefined | null
                           }
-                          readDepth={props.record.data.s[props.samples[i()].index]["DP"] as number | undefined}
+                          readDepth={props.record.data.s[props.samples[i()].index]["DP"] as number | undefined | null}
                         />
                       </td>
                     )}

diff --git a/src/components/record/Format.tsx b/src/components/record/Format.tsx
@@ -13,7 +13,7 @@ export const Format: Component<{
   record: Item<Record>;
   isAbbreviate: boolean;
   allelicBalance: number | undefined | null;
-  readDepth: number | undefined;
+  readDepth: number | undefined | null;
 }> = (props) => {
   return (
     <Switch

diff --git a/src/components/record/format/GenotypeField.tsx b/src/components/record/format/GenotypeField.tsx
@@ -35,10 +35,10 @@ export const GenotypeField: Component<{
   altAlleles: (string | null)[];
   isAbbreviate: boolean;
   allelicBalance: number | undefined | null;
-  readDepth: number | undefined;
+  readDepth: number | undefined | null;
 }> = (props) => {
   const allelicImbalance: boolean = isAllelicImbalance(props.genotype, props.allelicBalance);
-  const lowReadDepth = props.readDepth !== undefined && props.readDepth < 20;
+  const lowReadDepth = props.readDepth !== undefined && props.readDepth !== null && props.readDepth < 20;
   return (
     <>
       <For each={props.genotype.a}>