Merge pull request #85 from molgenis/feat/bam2cram

Replace .bam with .cram

README.md

@@ -15,7 +15,7 @@ export interface Api {
   getPhenotypes(params: Params): Promise<PagedItems<Phenotype>>;
   getFastaGz(contig: string, pos: number): Promise<Uint8Array | null>;
   getGenesGz(): Promise<Uint8Array | null>;
-  getBam(sampleId: string): Promise<Uint8Array | null>;
+  getCram(sampleId: string): Promise<Cram | null>;
   getHtsFileMetadata(): Promise<HtsFileMetadata>;
   getAppMetadata(): Promise<AppMetadata>;
   getDecisionTree(): Promise<DecisionTree | null>;

package.json

@@ -1,6 +1,6 @@
 {
   "name": "@molgenis/vip-report-api",
-  "version": "3.5.4",
+  "version": "4.0.0",
   "description": "TypeScript Report API for Variant Call Format (VCF) Report Templates",
   "scripts": {
     "build": "tsc --build",
@@ -30,19 +30,19 @@
     "access": "public"
   },
   "devDependencies": {
-    "@types/node": "^18.7.13",
-    "@typescript-eslint/eslint-plugin": "^5.35.1",
-    "@typescript-eslint/parser": "^5.35.1",
-    "@vitest/coverage-c8": "^0.22.1",
-    "eslint": "^8.22.0",
+    "@types/node": "^18.7.23",
+    "@typescript-eslint/eslint-plugin": "^5.38.1",
+    "@typescript-eslint/parser": "^5.38.1",
+    "@vitest/coverage-c8": "^0.23.4",
+    "eslint": "^8.24.0",
     "eslint-config-prettier": "^8.5.0",
     "eslint-plugin-prettier": "^4.2.1",
     "husky": "^8.0.1",
     "prettier": "^2.7.1",
-    "typescript": "^4.7.4",
-    "vitest": "^0.22.1"
+    "typescript": "^4.8.4",
+    "vitest": "^0.23.4"
   },
   "dependencies": {
-    "@molgenis/vip-report-vcf": "^1.2.3"
+    "@molgenis/vip-report-vcf": "^1.2.6"
   }
 }