Merge pull request #10 from molgenis/fix/ru_check

Fix RU check if statement
molgenis · Apr 25, 2024 · 1b3ebc7 · 1b3ebc7
2 parents 3e9fbcb + fef64d4
commit 1b3ebc7
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/straglr/tre.py b/straglr/tre.py
@@ -1307,7 +1307,7 @@ def output_vcf(self, variants, out_file, sample, loci_bed, genome_fasta, bam):
             if d_n > 0:
                 lc = int(d_sum / d_n)
 
-                is_ru_match = "1" if self.is_matching_repeat_unit(repeat_unit, bed_repeat_unit) else "0"
+                is_ru_match = self.is_matching_repeat_unit(repeat_unit, bed_repeat_unit)
 
                 if homzygous:
                     is_ref_allele = abs(allele1_repeat_count - ref_repeat_count) < 1