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This repository has been archived by the owner on Jul 16, 2024. It is now read-only.

Releases: moka-guys/workstation_housekeeping

v2.1.0

05 Jul 12:46
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  • Simplify command line argument inputs and remove wscleaner command bash script
  • Add settings.json for standardised formatting
  • Remove the installation of the wscleaner as a python package (this was unnecessary as the script is not used as an import to a python script)
  • Remove the need for specific wscleaner conda environments, instead specify use of the python3.10.6 environment – simplifies understanding of how to run scripts on the workstation
  • Add license
  • Add requirements.txt file
  • Add function to check if upload log file contains errors – a much more in depth check as to whether there were any errors with the runfolder upload
  • Get existing test suite working
  • Remove obsolete files
  • Sort order directories are checked in by last modified date
  • Allow multiple reasons for upload failure to be printed to the log (previously it only printed the first reason)
  • Add check of runfolders against regex pattern

v2.0.0

07 Jun 15:43
d4162fd
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Remove obsolete scripts

  • backup runfolder now in automated_scripts repo
  • findfastqs.sh not needed
  • ngrok_start.sh now lives in standalone repo
  • housekeeping_config not needed

add support for dockerised ngrok

12 Jul 11:13
90b8b0f
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ngrok_start.sh script now takes a variable which can be used when a dockerised version of ngrok is in use

Add support for TSO runs for wscleaner

07 Jun 15:43
3a528cf
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update some documentation

ngrok_start.sh

20 May 10:12
f0f31e3
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  • Add ngrok startup script

wscleaner update to check for 5 logfiles

09 Apr 09:57
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Merge pull request #26 from moka-guys/v1.8

Update workstation housekeeping docs to V1.8

change name of backup_runfolder logfile

27 Feb 13:23
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Merge pull request #21 from moka-guys/change_logfile_name

change backup_runfolder.py logfile name fix #19

Release wscleaner v1.0

29 Oct 10:55
ddb7a53
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This release packages wscleaner v1.0 in the workstation_housekeeping directory

wscleaner deletes local runfolders that have been uploaded to DNAnexus based on three criteria:

  • A single DNANexus project exists for runfolder
  • All fastqs uploaded in a 'closed' state
  • Six logfiles in the DNANexus project /Logfiles directory

Specify path to upload agent in config file

28 May 10:42
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Merge pull request #16 from moka-guys/v1.4

 issues with running on workstation. specify path to ua

upload 100 files at a time. fix issue with trailing slash in logfile path.

26 Apr 14:36
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Merge pull request #15 from moka-guys/v1.3

upload 100 at a time. change version number. fix #11