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Releases: moka-guys/workstation_housekeeping
Releases · moka-guys/workstation_housekeeping
v2.1.0
- Simplify command line argument inputs and remove wscleaner command bash script
- Add settings.json for standardised formatting
- Remove the installation of the wscleaner as a python package (this was unnecessary as the script is not used as an import to a python script)
- Remove the need for specific wscleaner conda environments, instead specify use of the python3.10.6 environment – simplifies understanding of how to run scripts on the workstation
- Add license
- Add requirements.txt file
- Add function to check if upload log file contains errors – a much more in depth check as to whether there were any errors with the runfolder upload
- Get existing test suite working
- Remove obsolete files
- Sort order directories are checked in by last modified date
- Allow multiple reasons for upload failure to be printed to the log (previously it only printed the first reason)
- Add check of runfolders against regex pattern
v2.0.0
Remove obsolete scripts
- backup runfolder now in automated_scripts repo
- findfastqs.sh not needed
- ngrok_start.sh now lives in standalone repo
- housekeeping_config not needed
add support for dockerised ngrok
ngrok_start.sh script now takes a variable which can be used when a dockerised version of ngrok is in use
Add support for TSO runs for wscleaner
update some documentation
ngrok_start.sh
- Add ngrok startup script
wscleaner update to check for 5 logfiles
Merge pull request #26 from moka-guys/v1.8 Update workstation housekeeping docs to V1.8
change name of backup_runfolder logfile
Merge pull request #21 from moka-guys/change_logfile_name change backup_runfolder.py logfile name fix #19
Release wscleaner v1.0
This release packages wscleaner v1.0 in the workstation_housekeeping directory
wscleaner deletes local runfolders that have been uploaded to DNAnexus based on three criteria:
- A single DNANexus project exists for runfolder
- All fastqs uploaded in a 'closed' state
- Six logfiles in the DNANexus project /Logfiles directory
Specify path to upload agent in config file
Merge pull request #16 from moka-guys/v1.4 issues with running on workstation. specify path to ua
upload 100 files at a time. fix issue with trailing slash in logfile path.
Merge pull request #15 from moka-guys/v1.3 upload 100 at a time. change version number. fix #11