chore: merged fix for quarto pdf

miracum · Jun 27, 2024 · 6aaae8d · 6aaae8d
2 parents 4c9c47d + 3cc3ab4
commit 6aaae8d
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Showing 4 changed files with 41 additions and 16 deletions.
diff --git a/R/create_pdf_report.R b/R/create_pdf_report.R
@@ -220,9 +220,11 @@ create_pdf_report <- function(rv = rv,
         tmpdir = tempdir(),
         fileext = "-params.yml"
       )
+
       writeLines(
         text = c(paste0("source_system_name: \"", rv$source$system_name, "\""),
                  paste0("target_system_name: \"", rv$target$system_name, "\""),
+                 paste0("sitename: \"", rv$sitename, "\""),
                  paste0("restricting_date: \"", get_restricting_date_info(
                    restricting_date = rv$restricting_date, time = FALSE), "\""
                  )),

diff --git a/data-raw/debugging_info.R b/data-raw/debugging_info.R
@@ -28,10 +28,11 @@ source_system_name = "kdb"
 # target_system_name = "p21csv"
 # target_system_name = "p21staging"
 # target_system_name = "omop"
-target_system_name = "fhir_gw"
+target_system_name = "dwh"
 # config_file = "../demo_settings_INTERNAL.yml"
 #utils_path = system.file("application/_utilities/", package = "miRacumDQA")
 utils_path = "../ume_dqatool/inst/application/_utilities/"
+utils_path = "./inst/demo_data/utilities/"
 #mdr_filename = "samply_export.csv"
 mdr_filename = "mdr_mini.csv"
 #mdr_filename = "mdr_debug.csv"
@@ -48,8 +49,8 @@ DIZtools::setenv_file(
 )
 parallel = TRUE
 ncores = 4
-restricting_date_start = "2022-01-01"
-restricting_date_end = "2022-12-31"
+restricting_date_start = "2021-01-01"
+restricting_date_end = "2021-12-31"
 
 # Sys.setenv("P21CSV_PATH" = "~/development/_p21/data/2018_merged/")
 

diff --git a/inst/demo_data/utilities/RMD/DQA_report.qmd b/inst/demo_data/utilities/RMD/DQA_report.qmd
@@ -17,24 +17,26 @@
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
 
-title: "Data Quality Report: Comparison of {{< meta source_system_name >}} and {{< meta target_system_name >}}"
-subtitle: "{{< meta restricting_date >}}"
+
+title: | 
+ | Data Quality Report: Comparison of {{< meta source_system_name >}} and {{< meta target_system_name >}}
+ |  \normalsize {{< meta restricting_date >}}
 author: "(c) Universitätsklinikum Erlangen"
 date: today
 
-output: 
+format: 
   pdf:
-    geometry: 'left=2.5cm,right=2.5cm,top=2cm,bottom=2cm' 
     toc: true
-    toc_depth: 2
-    number_sections: true
-    includes:
-      in_header: "./_header/header.tex"
-    keep_tex: true
-    pandoc_args:  [
-                    "--variable", "graphics=yes",
-                    "--variable", "compact-title=yes"
-                  ]
+    toc-depth: 2
+    number-sections: true
+    keep-tex: true
+    include-in-header: "./_header/header.tex"
+    geometry: 
+    - left=25mm
+    - right=25mm
+    - top=20mm
+    - bottom=20mm
+
 
 ---
 

diff --git a/inst/demo_data/utilities/RMD/_header/header.tex b/inst/demo_data/utilities/RMD/_header/header.tex
@@ -19,3 +19,23 @@
 \usepackage{float}
 \usepackage{pdflscape}
 \usepackage{longtable}
+
+\thispagestyle{empty}
+
+\pretitle{
+  \begin{center}
+  \LARGE
+  \vspace{4cm}
+}
+\posttitle{
+\end{center} 
+}
+
+\predate{
+ \begin{center}
+}
+\postdate{
+\end{center}
+\newpage
+}
+