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@d-callan
d-callan committed Jun 10, 2024
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40 changes: 20 additions & 20 deletions data-raw/Anopheles_albimanus/ontology/AnophelesAlbimanus_OntologyMetadata.txt
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Expand Up @@ -5,21 +5,31 @@ OBI_0003069 Sequencing Sequencing assay Sample A protocol that, when concretize
ENVO_01000739 Habitat string Environment information Sample An environmental system which can sustain and allow the growth of an ecological population. 1 ["Insect"] ["AnophelesAlbimanus.txt::env_feature"] ENVO_00002297
OBI_0100051 Sample type string Sample details Sample A material entity that has the specimen role. 4 ["Adult cuticle","Adult internal","Larvae cuticle","Larvae internal"] ["AnophelesAlbimanus.txt::sample_type"]
SO_0001000 Region of 16S rRNA sequenced string Sequencing Sample Cytosolic 16S rRNA is an RNA component of the small subunit of cytosolic ribosomes in prokaryotes. 1 ["V3-V4"] ["AnophelesAlbimanus.txt::region"]
EUPATH_0009252 Phylum Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of phylum.
EUPATH_0009253 Class Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of class.
EUPATH_0009254 Order Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of order.
EUPATH_0009255 Family Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of family.
EUPATH_0009256 Genus Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of genus.
EUPATH_0009257 Species Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of species.
EUPATH_0009351 Kingdom Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of kingdom.
EUPATH_0009352 Phylum Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of phylum.
EUPATH_0043212 Geolocation Geographic location Participant
OGMS_0000015 Clinical history Participant Participant
GAZ_00000448 Geographic location Community Participant
ENVO_00000009 Country string Geographic location Participant 1 ["Guatemala"] ["AnophelesAlbimanus.txt::country"] ENVO_00000004
ECTO_9002101 Pyrethroid insecticide exposure string Clinical history Participant An exposure to pyrethroid insecticide. 3 ["topical exposure to alphacypermethrin","topical exposure to deltamethrin","topical exposure to permethrin"] ["AnophelesAlbimanus.txt::exposure to pyrethroid insecticide"]
ENVO_00000856 City, village, or region string Geographic location Participant The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (v 1.512) (http://purl.bioontology.org/ontology/GAZ) 2 ["Guatemala: El Terrero, La Gomera, Escuintla","Guatemala: Las Cruces, La Gomera, Escuintla"] ["AnophelesAlbimanus.txt::location"] EUPATH_0000452
EUPATH_0000639 Study group string Participant Participant Describes treatment, infection status, etc. 4 ["El Terrero","Las Cruces 1","Las Cruces 3","Las Cruces 4"] ["AnophelesAlbimanus.txt::cohort"]
OBI_0003074 Subject common name string Participant Participant common name of the host, e.g. human 1 ["Anopheles albimanus"] ["AnophelesAlbimanus.txt::host_common_name"] EUPATH_0000512
UBERON_0000105 Host life stage string Participant Participant description of life stage of host 2 ["Larva, L3-L4 stage","Non-gravid adult female, 2-5 days old"] ["AnophelesAlbimanus.txt::host_life_stage"]
OMIT_0008430 Insecticide resistance string Participant Participant 3 ["pyrethroid resistant","pyrethroid susceptible","undetermined"] ["AnophelesAlbimanus.txt::phenotype"] EUPATH_0009007
EUPATH_0009353 Class Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of class.
EUPATH_0009354 Order Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of order.
EUPATH_0009355 Family Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of family.
EUPATH_0009356 Genus Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of genus.
EUPATH_0009351 Kingdom Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of kingdom.
EUPATH_0009354 Order Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of order.
EUPATH_0009352 Phylum Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of phylum.
EUPATH_0009357 Species Absolute taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of species.
EUPATH_0009250 Relative taxonomic abundance analysis Data analysis 16S rRNA (V4) assay A data transformation of input sequence data to obtain the fraction of relative abundance of organisms.
EUPATH_0009253 Class Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of class.
EUPATH_0009255 Family Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of family.
EUPATH_0009256 Genus Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of genus.
EUPATH_0009251 Kingdom Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of kingdom.
EUPATH_0009254 Order Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of order.
EUPATH_0009252 Phylum Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of phylum.
EUPATH_0009257 Species Relative taxonomic abundance analysis 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of species.
EUPATH_0009250 Relative taxonomic abundance analysis Data analysis 16S rRNA (V4) assay A data transformation of input sequence data to obtain the fraction of relative abundance of organisms.
EUPATH_0009356_Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Ancylobacter Ancylobacter number Genus 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of genus. 2 5 3.5 3.5 5 2 2 ["2.000000","5.000000"]
EUPATH_0009356_Bacteria_Proteobacteria_Alphaproteobacteria_Rhizobiales_Xanthobacteraceae_Xanthobacter Xanthobacter number Genus 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of genus. 3 4 3.66666666666667 4 4 3.5 2 ["3.000000","4.000000"]
EUPATH_0009252_Bacteria_Bdellovibrionota Bdellovibrionota number Phylum 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of phylum. 0.220544 0.220544 0.220544 0.220544 1 ["0.220544"]
Expand Down Expand Up @@ -730,13 +740,3 @@ EUPATH_0009354_Bacteria_Proteobacteria_Gammaproteobacteria_Xanthomonadales Xanth
EUPATH_0009255_Eukaryota_SAR_ unclassified SAR number Family 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of family. 0.006645 0.230769 0.0881518 0.06383 0.131757 0.007758 5 ["0.006645","0.007758","0.063830","0.131757","0.230769"]
EUPATH_0009357_Bacteria_Proteobacteria_Gammaproteobacteria_Burkholderiales_Comamonadaceae_ unclassified Comamonadaceae number Species 16S rRNA (V4) assay A data item that is the output of an absolute taxonomic abundance analysis for organisms grouped at the level of species. 1 49 12.1363636363636 5.5 15 4 14
EUPATH_0009256_Bacteria_Proteobacteria_Alphaproteobacteria_Azospirillales_ unclassified Azospirillales number Genus 16S rRNA (V4) assay A data item that is the output of a relative taxonomic abundance analysis for organisms grouped at the level of genus. 0.121495 0.121495 0.121495 0.121495 1 ["0.121495"]
EUPATH_0043212 Geolocation Geographic location Participant
OGMS_0000015 Clinical history Participant Participant
GAZ_00000448 Geographic location Community Participant
ENVO_00000009 Country string Geographic location Participant 1 ["Guatemala"] ["AnophelesAlbimanus.txt::country"] ENVO_00000004
ECTO_9002101 Pyrethroid insecticide exposure string Clinical history Participant An exposure to pyrethroid insecticide. 3 ["topical exposure to alphacypermethrin","topical exposure to deltamethrin","topical exposure to permethrin"] ["AnophelesAlbimanus.txt::exposure to pyrethroid insecticide"]
ENVO_00000856 City, village, or region string Geographic location Participant The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (v 1.512) (http://purl.bioontology.org/ontology/GAZ) 2 ["Guatemala: El Terrero, La Gomera, Escuintla","Guatemala: Las Cruces, La Gomera, Escuintla"] ["AnophelesAlbimanus.txt::location"] EUPATH_0000452
EUPATH_0000639 Study group string Participant Participant Describes treatment, infection status, etc. 4 ["El Terrero","Las Cruces 1","Las Cruces 3","Las Cruces 4"] ["AnophelesAlbimanus.txt::cohort"]
OBI_0003074 Subject common name string Participant Participant common name of the host, e.g. human 1 ["Anopheles albimanus"] ["AnophelesAlbimanus.txt::host_common_name"] EUPATH_0000512
UBERON_0000105 Host life stage string Participant Participant description of life stage of host 2 ["Larva, L3-L4 stage","Non-gravid adult female, 2-5 days old"] ["AnophelesAlbimanus.txt::host_life_stage"]
OMIT_0008430 Insecticide resistance string Participant Participant 3 ["pyrethroid resistant","pyrethroid susceptible","undetermined"] ["AnophelesAlbimanus.txt::phenotype"] EUPATH_0009007
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