Merge pull request #31 from microbiomeDB/data-cleanup

Data cleanup
microbiomeDB · Apr 29, 2024 · 23e2755 · 23e2755
2 parents 78c522a + ffb8f7c
commit 23e2755
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Showing 39 changed files with 2,653 additions and 2,653 deletions.
diff --git a/R/data.R b/R/data.R
diff --git a/data-raw/Bangladesh/sampleMetadata/Bangladesh_healthy_5yr_Sample.txt b/data-raw/Bangladesh/sampleMetadata/Bangladesh_healthy_5yr_Sample.txt
diff --git a/...ata/HMPWgs_MetagenomicSequencingAssay.txt → ...ata/HMPWgs_MetagenomicSequencingAssay.txt b/...ata/HMPWgs_MetagenomicSequencingAssay.txt → ...ata/HMPWgs_MetagenomicSequencingAssay.txt
diff --git a/..._WGS/ontology/HMPWgs_OntologyMetadata.txt → ..._MGX/ontology/HMPWgs_OntologyMetadata.txt b/..._WGS/ontology/HMPWgs_OntologyMetadata.txt → ..._MGX/ontology/HMPWgs_OntologyMetadata.txt
diff --git a/...WGS/sampleMetadata/HMPWgs_Participant.txt → ...MGX/sampleMetadata/HMPWgs_Participant.txt b/...WGS/sampleMetadata/HMPWgs_Participant.txt → ...MGX/sampleMetadata/HMPWgs_Participant.txt
diff --git a/.../HMP_WGS/sampleMetadata/HMPWgs_Sample.txt → .../HMP_MGX/sampleMetadata/HMPWgs_Sample.txt b/.../HMP_WGS/sampleMetadata/HMPWgs_Sample.txt → .../HMP_MGX/sampleMetadata/HMPWgs_Sample.txt
diff --git a/data/Anopheles_albimanus.rda b/data/Anopheles_albimanus.rda
diff --git a/data/BONUS.rda b/data/BONUS.rda
diff --git a/data/Bangladesh.rda b/data/Bangladesh.rda
diff --git a/data/DailyBaby.rda b/data/DailyBaby.rda
diff --git a/data/DiabImmune.rda b/data/DiabImmune.rda
diff --git a/data/ECAM.rda b/data/ECAM.rda
diff --git a/data/EcoCF.rda b/data/EcoCF.rda
diff --git a/data/FARMM.rda b/data/FARMM.rda
diff --git a/data/GEMS1.rda b/data/GEMS1.rda
diff --git a/data/HMP_MGX.rda b/data/HMP_MGX.rda
diff --git a/data/HMP_V1V3.rda b/data/HMP_V1V3.rda
diff --git a/data/HMP_V3V5.rda b/data/HMP_V3V5.rda
diff --git a/data/HMP_WGS.rda b/data/HMP_WGS.rda
diff --git a/data/Leishmaniasis.rda b/data/Leishmaniasis.rda
diff --git a/data/MALED_2yr.rda b/data/MALED_2yr.rda
diff --git a/data/MALED_diarrhea.rda b/data/MALED_diarrhea.rda
diff --git a/data/MORDOR.rda b/data/MORDOR.rda
diff --git a/data/Malaysia_helminth.rda b/data/Malaysia_helminth.rda
diff --git a/data/NICU_NEC.rda b/data/NICU_NEC.rda
diff --git a/data/PIH_Uganda.rda b/data/PIH_Uganda.rda
diff --git a/data/PretermInfantResistome1.rda b/data/PretermInfantResistome1.rda
diff --git a/data/PretermInfantResistome2.rda b/data/PretermInfantResistome2.rda
diff --git a/data/UgandaMaternal.rda b/data/UgandaMaternal.rda
diff --git a/man/BONUS.Rd b/man/BONUS.Rd
diff --git a/man/DiabImmune.Rd b/man/DiabImmune.Rd
diff --git a/man/FARMM.Rd b/man/FARMM.Rd
diff --git a/man/HMP_MGX.Rd b/man/HMP_MGX.Rd
diff --git a/man/HMP_WGS.Rd b/man/HMP_WGS.Rd
diff --git a/man/MORDOR.Rd b/man/MORDOR.Rd
diff --git a/man/Malaysia_helminth.Rd b/man/Malaysia_helminth.Rd
diff --git a/man/NICU_NEC.Rd b/man/NICU_NEC.Rd
diff --git a/man/PretermInfantResistome1.Rd b/man/PretermInfantResistome1.Rd
diff --git a/man/PretermInfantResistome2.Rd b/man/PretermInfantResistome2.Rd