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The great refactor

The great refactor #72

Triggered via pull request March 7, 2024 03:47
Status Failure
Total duration 28m 39s
Artifacts 5

R-CMD-check.yaml

on: pull_request
Matrix: R-CMD-check
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50 errors and 31 warnings
macos-latest (release)
could not find function "isNAorZero"
macos-latest (release)
could not find function "isNAorZero"
macos-latest (release)
File '../../inst/extdata/collection.tab' does not exist or is non-readable. getwd()=='/Users/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
macos-latest (release)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='/Users/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
macos-latest (release)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='/Users/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
macos-latest (release)
Test failures
macos-latest (release)
R CMD check found ERRORs
macos-latest (release)
Process completed with exit code 1.
macos-latest (release)
could not find function "isNAorZero"
macos-latest (release)
could not find function "isNAorZero"
windows-latest (release)
R CMD check found ERRORs
windows-latest (release)
could not find function "isNAorZero"
windows-latest (release)
could not find function "isNAorZero"
windows-latest (release)
File '../../inst/extdata/collection.tab' does not exist or is non-readable. getwd()=='D:/a/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
windows-latest (release)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='D:/a/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
windows-latest (release)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='D:/a/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
windows-latest (release)
Test failures
windows-latest (release)
Process completed with exit code 1.
windows-latest (release)
could not find function "isNAorZero"
windows-latest (release)
could not find function "isNAorZero"
ubuntu-latest (release)
R CMD check found ERRORs
ubuntu-latest (release)
could not find function "isNAorZero"
ubuntu-latest (release)
could not find function "isNAorZero"
ubuntu-latest (release)
File '../../inst/extdata/collection.tab' does not exist or is non-readable. getwd()=='/home/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
ubuntu-latest (release)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='/home/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
ubuntu-latest (release)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='/home/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
ubuntu-latest (release)
Test failures
ubuntu-latest (release)
Process completed with exit code 1.
ubuntu-latest (release)
could not find function "isNAorZero"
ubuntu-latest (release)
could not find function "isNAorZero"
ubuntu-latest (oldrel-1)
R CMD check found ERRORs
ubuntu-latest (oldrel-1)
could not find function "isNAorZero"
ubuntu-latest (oldrel-1)
could not find function "isNAorZero"
ubuntu-latest (oldrel-1)
File '../../inst/extdata/collection.tab' does not exist or is non-readable. getwd()=='/home/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
ubuntu-latest (oldrel-1)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='/home/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
ubuntu-latest (oldrel-1)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='/home/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
ubuntu-latest (oldrel-1)
Test failures
ubuntu-latest (oldrel-1)
Process completed with exit code 1.
ubuntu-latest (oldrel-1)
could not find function "isNAorZero"
ubuntu-latest (oldrel-1)
could not find function "isNAorZero"
ubuntu-latest (devel)
could not find function "isNAorZero"
ubuntu-latest (devel)
could not find function "isNAorZero"
ubuntu-latest (devel)
File '../../inst/extdata/collection.tab' does not exist or is non-readable. getwd()=='/home/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
ubuntu-latest (devel)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='/home/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
ubuntu-latest (devel)
File '../../inst/extdata/DiabImmune/DiabImmune_entity_16SRRNAV4Assay.txt' does not exist or is non-readable. getwd()=='/home/runner/work/microbiomeData/microbiomeData/check/microbiomeData.Rcheck/tests/testthat'
ubuntu-latest (devel)
Test failures
ubuntu-latest (devel)
R CMD check found ERRORs
ubuntu-latest (devel)
Process completed with exit code 1.
ubuntu-latest (devel)
could not find function "isNAorZero"
ubuntu-latest (devel)
could not find function "isNAorZero"
macos-latest (release)
Non-standard license specification:
macos-latest (release)
'::' or ':::' import not declared from: ‘purrr’
macos-latest (release)
Undocumented code objects:
macos-latest (release)
S4 class codoc mismatches from documentation object 'SampleMetadata-class':
macos-latest (release)
Undocumented arguments in documentation object 'Collection'
macos-latest (release)
LazyData DB of 66.3 MB without LazyDataCompression set
windows-latest (release)
Non-standard license specification:
windows-latest (release)
'::' or ':::' import not declared from: 'purrr'
windows-latest (release)
Undocumented code objects:
windows-latest (release)
S4 class codoc mismatches from documentation object 'SampleMetadata-class':
windows-latest (release)
Undocumented arguments in documentation object 'Collection'
windows-latest (release)
LazyData DB of 66.3 MB without LazyDataCompression set
ubuntu-latest (release)
Non-standard license specification:
ubuntu-latest (release)
'::' or ':::' import not declared from: ‘purrr’
ubuntu-latest (release)
Undocumented code objects:
ubuntu-latest (release)
S4 class codoc mismatches from documentation object 'SampleMetadata-class':
ubuntu-latest (release)
Undocumented arguments in documentation object 'Collection'
ubuntu-latest (release)
LazyData DB of 66.3 MB without LazyDataCompression set
ubuntu-latest (oldrel-1)
Non-standard license specification:
ubuntu-latest (oldrel-1)
'::' or ':::' import not declared from: ‘purrr’
ubuntu-latest (oldrel-1)
Undocumented code objects:
ubuntu-latest (oldrel-1)
S4 class codoc mismatches from documentation object 'SampleMetadata-class':
ubuntu-latest (oldrel-1)
Undocumented arguments in documentation object 'Collection'
ubuntu-latest (oldrel-1)
Error loading dataset 'BONUS':
ubuntu-latest (oldrel-1)
LazyData DB of 66.3 MB without LazyDataCompression set
ubuntu-latest (devel)
Non-standard license specification:
ubuntu-latest (devel)
'::' or ':::' import not declared from: ‘purrr’
ubuntu-latest (devel)
Undocumented code objects:
ubuntu-latest (devel)
S4 class codoc mismatches from Rd file 'SampleMetadata-class.Rd':
ubuntu-latest (devel)
Undocumented arguments in Rd file 'Collection.Rd'
ubuntu-latest (devel)
LazyData DB of 65.9 MB without LazyDataCompression set

Artifacts

Produced during runtime
Name Size
Linux-X64-rdevel-2-results Expired
212 MB
Linux-X64-roldrel-1-4-results Expired
212 MB
Linux-X64-rrelease-3-results Expired
212 MB
Windows-X64-rrelease-1-results Expired
203 MB
macOS-X64-rrelease-0-results Expired
203 MB