Code

Function to run NMTRAN on a model#705

Code

Merged

barrettk merged 31 commits intomainmetrumresearchgroup/bbr:mainfrom feat/run_nmtranmetrumresearchgroup/bbr:feat/run_nmtranCopy head branch name to clipboardAug 7, 2024

+902-3

Commits

Commits on Jun 28, 2024

• new run_nmtran function for checking tha validity of a model submission

  barrettk

  committed
  40edc91

• new print method for nmtran_process

  barrettk

  committed
  2fbd57a

• document and add tests

  barrettk

  committed
  aa78cbb

• remove check for minimum version of nmrec

  Show description for 9f933ce
  barrettk

  committed
  9f933ce

• add run_nmtran to pkgdown site

  barrettk

  committed
  51273bb

Commits on Jul 10, 2024

• fix: status value handling

  Show description for c211059
  barrettk

  committed
  c211059

• add new nm_fdata function for returning FDATA via NM-TRAN

  Show description for 7c3b2eb
  barrettk

  committed
  7c3b2eb

• add print method and error catching for fdata

  Show description for 2abd55c
  barrettk

  committed
  2abd55c

Commits on Jul 15, 2024

• remove nm_fdata from this PR

  Show description for d23855e
  barrettk

  committed
  d23855e

• revert nm_file_impl change used in nm_fdata

  Show description for 1b1681f
  barrettk

  committed
  1b1681f

Commits on Jul 16, 2024

• remove mod_path from args

  Show description for d93af1f
  barrettk

  committed
  d93af1f

Commits on Jul 18, 2024

• added support for passing specific bbi_args to NM-TRAN call

  Show description for afe8540
  barrettk

  committed
  afe8540

Commits on Jul 19, 2024

• add details to .bbi_args options

  barrettk

  committed
  7b245c8

Commits on Jul 23, 2024

• Minor updates from KyleM's feedback

  Show description for fbe1344
  barrettk

  committed
  fbe1344

• refactor setup and formatting of .bbi_args

  Show description for fea7424
  barrettk

  committed
  fea7424

• adjust directory handling in execute_nmtran

  barrettk

  committed
  315f4cc

• adjust .config_path abort message when invalid path is specified

  barrettk

  committed
  7a5a762

Commits on Jul 24, 2024

• documentation and tempdir adjustments

  barrettk

  committed
  85969c9

• refactor setup of NM-TRAN executable

  Show description for e0c0281
  barrettk

  committed
  e0c0281

• run nmtran_presort before NM-TRAN

  Show description for f1e9c7d
  barrettk

  committed
  f1e9c7d

Commits on Jul 25, 2024

• refactored nmtran_presort and updated documentation/tests

  Show description for bfa71e1
  barrettk

  committed
  bfa71e1

• convert process$new() calls to run() calls

  Show description for d52d123
  barrettk

  committed
  d52d123

Commits on Jul 30, 2024

• refactors and updates from feedback

  Show description for ed5d19f
  barrettk

  committed
  ed5d19f

• add handling for NULL nonmem versions in bbi.yaml

  Show description for 1bfc3f4
  barrettk

  committed
  1bfc3f4

Commits on Jul 31, 2024

• update parse_nmtran_args to mimic submit_model handling of .bbi_args

  Show description for 6f18560
  barrettk

  committed
  6f18560

• test fix: adjust error message

  barrettk

  committed
  6333a00

• add additional test for parse_nmtran_args changes

  barrettk

  committed
  ebe3f13

Commits on Aug 1, 2024

• address minor feedback and add dedicated parse_nmtran_args tests

  Show description for 1234612
  barrettk

  committed
  1234612

Commits on Aug 2, 2024

• documentation and test adjustments from feedback

  Show description for dd8bc6e
  barrettk

  committed
  dd8bc6e

• Add support for Windows

  Show description for 29995f7
  barrettk

  committed
  29995f7

Commits on Aug 7, 2024

• tweak comment about NM-TRAN and nmtran_presort on Windows

  barrettk

  committed
  784c3c2