34 dockerisation and ci build #40
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Milestone 0.0.3 with Flare Endpoint and Integration Tests Signed-off-by: Lucas Triefenbach <[email protected]>
Milestone 0.0.3 with Flare Endpoint and Integration Tests Signed-off-by: Lucas Triefenbach <[email protected]>
# Conflicts: # src/main/java/de/medizininformatikinitiative/torch/util/Redaction.java
# Conflicts: # pom.xml # src/main/java/de/medizininformatikinitiative/torch/rest/FhirController.java # src/main/java/de/medizininformatikinitiative/torch/util/ElementCopier.java # src/main/java/de/medizininformatikinitiative/torch/util/Redaction.java # src/main/resources/application.yml # src/test/java/de/medizininformatikinitiative/torch/CrtdlTest.java # src/test/resources/application.yml
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| //Set of PatIds that survived the | ||
| Set<String> safeGroup = new HashSet<>(); | ||
| List<String> batches = splitListIntoBatches(patients, batchSize); | ||
| logger.debug("FHIR search List size for group {}: {}", group, batches.size()); |
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| } | ||
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| @Bean | ||
| public ResourceTransformer resourceTransformer(DataStore dataStore, ElementCopier copier, Redaction redaction, CdsStructureDefinitionHandler cds, FhirContext context) { |
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| } | ||
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| @Bean | ||
| public ResourceTransformer resourceTransformer(DataStore dataStore, ElementCopier copier, Redaction redaction, CdsStructureDefinitionHandler cds, FhirContext context) { |
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| } | ||
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| @Bean | ||
| public ResourceTransformer resourceTransformer(DataStore dataStore, ElementCopier copier, Redaction redaction, CdsStructureDefinitionHandler cds, FhirContext context) { |
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| result.append(".").append(sliceParts[1]); | ||
| }else { | ||
| String sliceName = sliceParts[1].replace(path, ""); | ||
| Base element; |
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| } catch (NullPointerException ex) { | ||
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| logger.error(" Child Type Unknown {}", childID,child.getName()); |
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| @Test | ||
| public void testMustHave() throws IOException { | ||
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| FileInputStream fis = new FileInputStream(RESOURCE_PATH_PREFIX+"CRTDL/CRTDL_observation_must_have.json"); |
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Potential input resource leak Warning test
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| @Test | ||
| public void testFlare() throws IOException { | ||
| FileInputStream fis = new FileInputStream("src/test/resources/CRTDL/CRTDL_diagnosis_female.json"); |
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