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update readme
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jakevc committed May 27, 2021
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7 changes: 4 additions & 3 deletions README.md
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Expand Up @@ -9,7 +9,7 @@ Simple peak caller for CUT&TAG data
Download the latest release binary specific for your operating system:

```
wget -O gopeaks https://github.com/maxsonBraunLab/gopeaks/releases/download/v0.1.5/gopeaks-linux-amd64
wget -O gopeaks https://github.com/maxsonBraunLab/gopeaks/releases/download/v0.1.7/gopeaks-linux-amd64
chmod +x gopeaks
```

Expand All @@ -19,15 +19,15 @@ chmod +x gopeaks
./gopeaks -h
Usage of ./gopeaks:
-bam string
Bam file with
Bam file with
-control string
Bam file with contriol signal to be subtracted
-cs string
Supply chromosome sizes for the alignment genome if not found in the bam header
-mdist int
Merge distance for nearby peaks (default 150)
-minwidth int
Minimum width to be considered a peak (default 250)
Minimum width to be considered a peak (default 150)
-mr int
Min reads per coverage bin to be considered (default 15)
-of string
Expand All @@ -40,6 +40,7 @@ Usage of ./gopeaks:
Bin size for coverage bins (default 100)
```


## call peaks on a bam file using an IgG control

```
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