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Merge pull request #606 from matthiaskoenig/outputs_refactoring
Outputs refactoring
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| # TODO | ||
| ## Matthias | ||
| - [x] remove search for reference | ||
| - [x] fix urlslug issue | ||
| - [x] Fix the application display bug | ||
| - [x] Build component for InfoNode | ||
| - [x] Update info node information | ||
| - [x] Fix missing url for annotations | ||
| - [x] Create annotation & xref components | ||
| - [x] Fix database statistics (better view, https://github.com/matthiaskoenig/pkdb/issues/486) | ||
| - [x] Fix landing page | ||
| - [x] tables in tab component for results | ||
| - [x] Cleanup/reduction of all tables | ||
| - [x] documentation of search (info buttons) | ||
| - [x] small values are not displayed. example: "http://0.0.0.0:8081/studies/PKDB00300". This library might help pretty print values "https://github.com/gentooboontoo/js-quantities". (Janek: I added it here not shure if I should do it.) | ||
| - [x] Substance missing in output table | ||
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| - [ ] Fix dead buttons in frontend (link to InfoNode component, https://github.com/matthiaskoenig/pkdb/issues/517) | ||
| - [ ] Cleanup Study Detail view | ||
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| - [ ] show info nodes characteristica details | ||
| - [ ] show detail views for study, group, individual, reference (fix 404 on detail buttons), remove reference button | ||
| - [ ] Fix API url | ||
| - [ ] fix study and reference link button | ||
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| ## Janek | ||
| - [ ] Search | ||
| - [x] Fix: search selection must be cleared before applying search examples (if things are | ||
| already selected in other fields examples are not working) | ||
| - [x] Fix: select study options are all uppercase | ||
| - [x] Fix: align groups and individuals button next to each other (to save space) | ||
| - [x] Fix: add filter for outputs/timecourses analoque to groups/individuals | ||
| - [x] Fix: download button not working | ||
| - [x] Fix: spinning wheel while download is displayed at a wrong place | ||
| - [x] selection of single study is not working (example1 of help) | ||
| - [x] why do I get timecourses in search example 2 and 3 (i.e. selection half-life or AUC as output, | ||
| but timecourse results are given) ( the timecourses, which were used to calculate the half-lifes were shown. Now they are not displayed anymore.) | ||
| - [x] timcourses cannot be search. | ||
| -[x] highlight characteristca | ||
| - [ ] REST API | ||
| - [ ] better REST documentation () | ||
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| - [x] replace url_slug with sid | ||
| - [x] fixed bug in frontend (loading property). | ||
| - [x] use label for 'name' in info node serializer | ||
| - [x] Fix 404 reference links; | ||
| - [x] Update studies serializer to include reference information | ||
| - [x] Search frontend: display information count (high level overview of results) | ||
| - [x] Show study & info node information on search hover | ||
| - [x] fix the group & individual checkbox behavior (concise view) | ||
| - [x] fix mistake on pkdata calucalation related to 0 outputs. | ||
| - [x] remove abstract info nodes from search | ||
| - [x] add validation on label column (only "col==" allowed) | ||
| - [x] fix search highlight (simple solution to apply to components without need fro explicitly stating highlight) | ||
| - [x] Fix table sorting! This is currently not working, so remove sorting on all tables or fix the sorting behavior | ||
| - [x] Calculate timecourses from database | ||
| - [x] bug in concise on curators | ||
| - [x] issues sort | ||
| - [x] issues search | ||
| - [x] no nested components, select choices and measurement types; | ||
| - [x] display info node information for choices | ||
| - [x] example for filling the search component with data (Intervention: substance=midazolam; Group: homo sapiens; ) | ||
| - [x] update information on full selection (not only info button) | ||
| - [x] selection of choices not working (not visible and not selectable easily) | ||
| - [x] empty search should give all results, but currently the results are empty | ||
| - [x] bug in search for form {option.label }} added | ||
| - [x] no info node details on Individuals & Groups search | ||
| - [x] search form is too high/large, not visible on normal display | ||
| - [x] many console errors on search (`TypeError: t.response is undefined) | ||
| - [x] timecourses not depicted in search results | ||
| - [x] download button | ||
| - [x] download results button -> JSON PKDBdata (-> zip) | ||
| - [ ] better name for zip file, e.g. pkdb_data_2020-08-23.zip | ||
| - [x] Add datasets automatically for timecourses | ||
| - [x] repair analysis serializer | ||
| - [x] create a hash for search queries to avoid very long urls | ||
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| # General @all | ||
| - [x] Logo & Name in Navigation menu | ||
| - [x] Update studies in new format | ||
| - [ ] manuscript updates | ||
| -[x] add contributions of all authors | ||
| - [ ] Fix Layout of main component (refactor in smaller components) | ||
| - [ ] Better REST documentation | ||
| - [ ] better name for zip file, e.g. pkdb_data_2020-08-23.zip | ||
| - [ ] fix data issues (missing titles), descriptions of info nodes | ||
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| --- | ||
| - [ ] cache info nodes in store | ||
| - [ ] implement additional validation rules | ||
| - [ ] filter by access or license | ||
| - [ ] make scatters available |