Python 3.13

.github/workflows/playwright.yml

@@ -37,7 +37,7 @@ jobs:
         shell: bash
     env:
       NODE_ENV: test
-      DEBUG: 'pw:webserver'
+      DEBUG: "pw:webserver"
 
     steps:
       - name: 🛑 Cancel Previous Runs
@@ -59,17 +59,17 @@ jobs:
         uses: actions/setup-node@v4
         with:
           node-version: 20
-          cache: 'pnpm'
-          cache-dependency-path: '**/pnpm-lock.yaml'
+          cache: "pnpm"
+          cache-dependency-path: "**/pnpm-lock.yaml"
 
       - name: 📦 Build frontend
         run: make fe
 
-      - name: 🐍 Setup Python 3.12
+      - name: 🐍 Setup Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: '3.12'
-          cache: 'pip'
+          python-version: "3.13"
+          cache: "pip"
 
       # We tried to add uv, but marimo is unable to
       # start when installed.

.github/workflows/test_be.yaml

@@ -37,30 +37,36 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        dependencies: ['core', 'core,optional']
-        python-version: ['3.9']
+        dependencies: ["core", "core,optional"]
+        python-version: ["3.9"]
         include:
           - os: ubuntu-latest
-            python-version: '3.10'
-            dependencies: 'core'
+            python-version: "3.10"
+            dependencies: "core"
           - os: ubuntu-latest
-            python-version: '3.11'
-            dependencies: 'core'
+            python-version: "3.11"
+            dependencies: "core"
           - os: ubuntu-latest
-            python-version: '3.12'
-            dependencies: 'core'
+            python-version: "3.12"
+            dependencies: "core"
           - os: ubuntu-latest
-            python-version: '3.9'
-            dependencies: 'core,optional'
+            python-version: "3.13"
+            dependencies: "core"
           - os: ubuntu-latest
-            python-version: '3.10'
-            dependencies: 'core,optional'
+            python-version: "3.9"
+            dependencies: "core,optional"
           - os: ubuntu-latest
-            python-version: '3.11'
-            dependencies: 'core,optional'
+            python-version: "3.10"
+            dependencies: "core,optional"
           - os: ubuntu-latest
-            python-version: '3.12'
-            dependencies: 'core,optional'
+            python-version: "3.11"
+            dependencies: "core,optional"
+          - os: ubuntu-latest
+            python-version: "3.12"
+            dependencies: "core,optional"
+          - os: ubuntu-latest
+            python-version: "3.13"
+            dependencies: "core,optional"
     steps:
       - name: 🛑 Cancel Previous Runs
         uses: styfle/[email protected]

.github/workflows/test_cli.yaml

@@ -54,13 +54,13 @@ jobs:
         uses: actions/setup-node@v4
         with:
           node-version: 20
-          cache: 'pnpm'
-          cache-dependency-path: '**/pnpm-lock.yaml'
+          cache: "pnpm"
+          cache-dependency-path: "**/pnpm-lock.yaml"
 
       - name: 📦 Build frontend
         run: make fe
         env:
-          NODE_OPTIONS: '--max_old_space_size=8192'
+          NODE_OPTIONS: "--max_old_space_size=8192"
 
       - name: 🥚 Install Hatch
         uses: pypa/hatch@install
@@ -102,7 +102,7 @@ jobs:
     strategy:
       matrix:
         # TODO(akshayka): consider adding 3.8, 3.9
-        python-version: ['3.12']
+        python-version: ["3.13"]
         os: [ubuntu-latest, macos-latest, windows-latest]
 
     steps:
@@ -113,7 +113,7 @@ jobs:
         uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
-          cache: 'pip'
+          cache: "pip"
 
       - name: Install Python deps
         run: |
@@ -145,11 +145,11 @@ jobs:
       - name: 🛑 Cancel Previous Runs
         uses: styfle/[email protected]
       - uses: actions/checkout@v4
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@v5
         with:
-          python-version: '3.12'
-          cache: 'pip'
+          python-version: "3.13"
+          cache: "pip"
 
       - name: 🐍 Setup uv
         uses: yezz123/setup-uv@v4

pyproject.toml

@@ -65,6 +65,7 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
     "Programming Language :: Python :: 3 :: Only",
 ]
 
@@ -127,10 +128,10 @@ dependencies = ["uv>=0.4.17"]
 
 [tool.hatch.envs.default]
 features = ["dev"]
-python = "3.12"
+python = "3.13"
 installer = "uv"
 dependencies = [
-    "uv>=0.4.17", # so we can bump the version used by hatch
+    "uv>=0.4.20", # so we can bump the version used by hatch
     # Typo checking
     "typos~=1.23.6",
 ]
@@ -140,7 +141,7 @@ lint = "ruff check --fix"
 format = "ruff format"
 
 [tool.hatch.envs.typecheck]
-python = "3.12"
+python = "3.13"
 installer = "uv"
 dependencies = [
     "mypy~=1.10.1",
@@ -169,7 +170,7 @@ extra-dependencies = [
 ]
 
 [[tool.hatch.envs.test.matrix]]
-python = ["3.9","3.10", "3.11", "3.12"]
+python = ["3.9","3.10", "3.11", "3.12", "3.13"]
 
 [tool.hatch.envs.test.scripts]
 test = "pytest{env:HATCH_TEST_ARGS:} {args:tests}"
@@ -206,13 +207,13 @@ extra-dependencies = [
     "nbformat >=5.10.4",
     "sympy>=1.13.2",
     # For standard scientific computing/ ML
-    "jax>=0.4.0; python_version == '3.12'",
-    "torch>=2.4.0; python_version == '3.12'",
-    "scikit-bio>=0.6.0; python_version == '3.12'",
+    "jax>=0.4.0; python_version >= '3.12'",
+    "torch>=2.4.0; python_version >= '3.12'",
+    "scikit-bio>=0.6.0; python_version >= '3.12'",
 ]
 
 [[tool.hatch.envs.test-optional.matrix]]
-python = ["3.9","3.10", "3.11", "3.12"]
+python = ["3.9","3.10", "3.11", "3.12", "3.13"]
 
 [tool.hatch.envs.docs]
 features = ["docs"]