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pedtools 2.4.0
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@magnusdv magnusdv released this 03 Oct 07:05
v2.4.0
85c22a2

New features

  • The plot() method now handles general (unnested) lists of ped objects. This means that, for instance, with x = list(nuclearPed(1), cousinPed(1), singleton(1)), the command plot(x) simply works. Previously all ped lists had to be handled by plotPedList(). (This is still needed for finer control of each component, and with nested lists.)

  • nMarkers() and hasMarkers() have a new argument compwise for more detailed output for ped lists.

  • linearPed(0) now produces a singleton (instead of an error).

  • setAfreq() now automatically updates the mutation model of the affected marker, if present.

  • readFreqDatabase() now accepts frequency files using the long format of MERLIN.

  • readFreqDatabase() gains a logical argument scale1, which, if TRUE, scales all vectors to sum 1.

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