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Code for "Entropy Partial Transport with Tree Metrics: Theory and Practice" -- AISTATS 2021 (Tam Le & Truyen Nguyen)
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lttam/EntropyPartialTransport
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% README % Using mexEMD to compute KT (standard complete optimal transport) % mexEMD is a third-party software: https://github.com/gpeyre/2017-ot-beginners/tree/master/matlab/mexEMD % Using BuildTreeMetric_HighDim_V2 to sample tree metric (clustering-based % tree metric sampling) % BuildTreeMetric_HighDim_V2 is a third-party software: https://github.com/lttam/TreeWasserstein % (Used in document classification experiments) % We adapted BuildTreeMetric_HighDim_V2 to BuildTreeMetric_LowDim_V2 % (partition-based tree metric sampling) to sample tree metric for % persistence diagrams in our experiments. % Implementation for d_{\alpha} and \tilde{ET}_\lambda^\alpha is simple % (closed-form solution). Therefore, % (step-1) sample tree metrics % (step-2) use the closed-form solutions
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Code for "Entropy Partial Transport with Tree Metrics: Theory and Practice" -- AISTATS 2021 (Tam Le & Truyen Nguyen)
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