More changes to ensure intermediate files are present for all notebooks

Essentially all prior steps must be run in every notebook

docs/notebooks/Testing_fit_of_one_object_of_the_catalogue.ipynb

@@ -56,6 +56,42 @@
     "keymap[\"ZFIX\"] = lp.keyword(\"ZFIX\", \"YES\")"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "a6e5c4fc-d37a-4e5c-8882-a6b7ce168efd",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "#before running PhotoZ we must run filt, sedtolib and maggal\n",
+    "filterLib = lp.Filter(config_file=config_file)\n",
+    "filterLib.run()\n",
+    "sedlib = lp.Sedtolib(config_keymap=keymap)\n",
+    "sedlib.run(typ=\"STAR\", star_sed=\"$LEPHAREDIR/sed/STAR/STAR_MOD_ALL.list\")\n",
+    "sedlib.run(typ=\"QSO\", qso_sed=\"$LEPHAREDIR/sed/QSO/SALVATO09/AGN_MOD.list\", gal_lib=\"LIB_QSO\")\n",
+    "sedlib.run(typ=\"GAL\", gal_sed=\"$LEPHAREDIR/examples/COSMOS_MOD.list\", gal_lib=\"LIB_GAL\")\n",
+    "maglib = lp.MagGal(config_keymap=keymap)\n",
+    "maglib.run(typ=\"STAR\", lib_ascii=\"YES\", star_lib_out=\"ALLSTAR_COSMOS\")\n",
+    "maglib.run(\n",
+    "    typ=\"QSO\",\n",
+    "    lib_ascii=\"YES\",\n",
+    "    mod_extinc=\"0,1000\",\n",
+    "    eb_v=\"0.,0.1,0.2,0.3\",\n",
+    "    extinc_law=\"SB_calzetti.dat\",\n",
+    "    qso_lib_in=\"LIB_QSO\",\n",
+    ")\n",
+    "maglib.run(\n",
+    "    typ=\"GAL\",\n",
+    "    lib_ascii=\"YES\",\n",
+    "    gal_lib_in=\"LIB_GAL\",\n",
+    "    gal_lib_out=\"VISTA_COSMOS_FREE\",\n",
+    "    mod_extinc=\"18,26,26,33,26,33,26,33\",\n",
+    "    extinc_law=\"SMC_prevot.dat,SB_calzetti.dat,SB_calzetti_bump1.dat,SB_calzetti_bump2.dat\",\n",
+    "    em_lines=\"EMP_UV\",\n",
+    "    em_dispersion=\"0.5,0.75,1.,1.5,2.\",\n",
+    ")"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,