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Default luciphor to HCD even when mixed activation is used (e.g. CID …
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…plus HCD), this was missing in previous commit
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glormph committed Aug 31, 2023
1 parent 49a0849 commit c973989
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -1122,7 +1122,7 @@ process luciphorPTMLocalizationScoring {
msstitch split -i "${allpsms}" --splitcol \$(head -n1 "${allpsms}" | tr '\t' '\n' | grep -n ^TD\$ | cut -f 1 -d':')
export MZML_PATH=\$(pwd)
export MINPSMS=${params.minpsms_luciphor}
export ALGO=${['hcd', 'auto'].any { it == params.activation } ? '1' : '0'}
export ALGO=${['hcd', 'auto', 'any'].any { it == params.activation } ? '1' : '0'}
export MAXPEPLEN=${params.maxpeplen}
export MAXCHARGE=${params.maxcharge}
export THREAD=${task.cpus * params.threadspercore}
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