metagenome_mining2

• Re-implementation of metagenome_mining1
• Idea: https://drive.google.com/file/d/1wR-9E65o1lOcMnk6oLGw_ODculwMclmv/view?usp=sharing
• Getting started:
  • This notebooks were originally run in a linux environment (WSL) with conda
  • Clone the repository to your local computer with: git clone [email protected]:lab-biotek-bio-ugm/metagenome_mining2.git
  • Go to the cloned repository and create conda environment with: conda env create -f envs/mgnify.yml
  • Activate environment with: conda activate mgnify
  • Run jupyter lab with: jupyter lab
  • Start with notebooks/00_data_scraping.ipynb to get the data required for analysis
  • Have fun!