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docs(README.md): Add abspath, mod, and ignoregenerated flag docs (#220)
Noticed that some useful flags were not documented in the README.md. I've added the these in what I think are the relevant sections. I did a minimal explanation of the flags, but can expand on them. I erred on the side of not expanding on -ignoregenerated for example because the regex might change in the future, and documentation tends to be a forgotten update...
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