GitHub - khourhin/pyNextGen: The evolution of pyGen with Python and R code for more advanced Bioinformatic and deep sequencing analysis

khourhin / pyNextGen Public

The evolution of pyGen with Python and R code for more advanced Bioinformatic and deep sequencing analysis

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Name		Name	Last commit message	Last commit date
Latest commit History 262 Commits
R		R
docs		docs
snake_make_recipes		snake_make_recipes
.gitignore		.gitignore
__init__.py		__init__.py
alternative_splicing.py		alternative_splicing.py
basics_bam.py		basics_bam.py
basics_bed.py		basics_bed.py
basics_biomart.py		basics_biomart.py
basics_blast.py		basics_blast.py
basics_counts.py		basics_counts.py
basics_ensembl.py		basics_ensembl.py
basics_entrez.py		basics_entrez.py
basics_fasta.py		basics_fasta.py
basics_fastq.py		basics_fastq.py
basics_go.py		basics_go.py
basics_gtf.py		basics_gtf.py
basics_nuc_seq.py		basics_nuc_seq.py
basics_seq.py		basics_seq.py
basics_sra.py		basics_sra.py
basics_sra_stream.py		basics_sra_stream.py
bed_lib.py		bed_lib.py
clusters_from_bam.py		clusters_from_bam.py
clusters_from_blast.py		clusters_from_blast.py
coverage_comparisons.py		coverage_comparisons.py
div_trans_lib.py		div_trans_lib.py
identify_my_gene.py		identify_my_gene.py
majiq1_run.py		majiq1_run.py
majiq_run.py		majiq_run.py
metagene.py		metagene.py
mylog.py		mylog.py
output_plotting.py		output_plotting.py
post_DR_lib.py		post_DR_lib.py
pyNextGen.py		pyNextGen.py
ribo_profiling.py		ribo_profiling.py
run_ipynb_params.py		run_ipynb_params.py
serial_plotter.py		serial_plotter.py
snake_generator.py		snake_generator.py
utils.py		utils.py