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Update and rename mldn-data-flow.md to data-flow.md
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adding updated data flow diagram discussed in #8 (comment)

renaming page as well since it's part of the mldn repo, we don't need to repeat it.
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MathewBiddle authored Sep 13, 2024
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46 changes: 20 additions & 26 deletions _docs/mldn-data-flow.md → _docs/data-flow.md
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Expand Up @@ -7,10 +7,9 @@ summary: This is a summary of the Marine Life Data Network (MLDN) data flow for
mermaid: true
---

# MLDN Data Flow
# Marine Life Data Network Data Flow

```mermaid
%%{
init: {
'theme': 'base',
Expand Down Expand Up @@ -39,38 +38,33 @@ Access Point
C("Darwin Core
Alignment")
D[(NCEI)]
D[("NOAA's National Centers
for Environmental Information (NCEI)")]
E[("OBIS node")]
E[("Ocean Biodiversity
Information System
node")]
G([OBIS])
G[("Ocean Biodiversity
Information System (OBIS)")]
H([GBIF])
H[("Global Biodiversity Information Facility (GBIF)")]
I[("IOOS Data Catalog
(data.ioos.us)")]
FC(["Federal Catalogs/
Products/
Integration with
Environmental Obs"])
(data.ioos.us)
(metadata only)")]
A --> B
B -- Metadata --> I
B ----> I
B --> C
B --> D
B ----> D
C --> E
E --> G
E --> H
I --> FC
G --> FC
H --> FC
D --> FC
E -- OBIS-USA --> D
```


Expand Down Expand Up @@ -178,10 +172,10 @@ aligning datasets to Darwin Core.
## Sending to OBIS-USA
Below are the various options for sending your data to OBIS-USA.

* **Recommended**: use the [Dataset Review Request](https://github.com/ioos/bio_data_guide/issues/new/choose) issue to initialize the request.
* Attend the monthly [Standardizing Marine Biological Data Working Group](https://github.com/ioos/bio_data_guide#monthly-meetings) meeting and discuss transfer options.
* Contribute your dataset (and code) to the `datasets/` directory in the ioos/bio_data_guide repository ([here](https://github.com/ioos/bio_data_guide/tree/main/datasets)). See the [Contribute example applications](https://github.com/ioos/bio_data_guide/blob/main/CONTRIBUTING.md#contribute-example-applications) documentation for more information.
* Contribute your dataset (and code) to the `datasets/` directory in the [ioos/bio_data_guide](https://github.com/ioos/bio_data_guide/) repository. See the [Contribute example applications](https://github.com/ioos/bio_data_guide/blob/main/CONTRIBUTING.md#contribute-example-applications) documentation for more information.
* Email Darwin Core aligned files to OBIS-USA: <[email protected]>.
* Or, use the [Dataset Review Request](https://github.com/ioos/bio_data_guide/issues/new/choose) issue to initialize the request.

## Sending to NCEI
When planning on submitting data to NCEI, the data provider should coordinate submissions through the IOOS Office to
Expand All @@ -201,7 +195,7 @@ has some affiliation with IOOS). Below is a short summary of the two submission
Collections (ATRAC) to submit repeating or multiple delivery data, or data that exceeds 20 GB.
* [S2N](https://www.ncei.noaa.gov/archive/send2ncei/) - Use Send2NCEI to submit non-repeating or single delivery data less than 20 GB.

**Note:** NCEI and OBIS-USA have established an automated process to archive the datasets from the OBIS-USA IPT. The process archives
{% include note.html content="NCEI and OBIS-USA have established an automated process to archive the datasets from the OBIS-USA IPT. The process archives
the Darwin Core Archive version of the dataset and updates the NCEI Archival Information Package found at
<https://www.ncei.noaa.gov/access/metadata/landing-page/bin/iso?id=gov.noaa.nodc:0250940>. While the OBIS-IPT is an extremely valuable
product, the raw data should be archived at NCEI as well.
product, the raw data should be archived at NCEI as well." %}

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