check if in colab and as y/n before installing

ioos · Sep 1, 2023 · 1a6d5ac · 1a6d5ac
1 parent e116165
commit 1a6d5ac
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Showing 23 changed files with 209 additions and 140 deletions.
diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2016-10-12-fetching_data.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2016-10-12-fetching_data.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"erddapy\"]\n",
+    "deps = ['erddapy']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2016-11-15-glider_data_example.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2016-11-15-glider_data_example.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"cf_xarray\", \"palettable\", \"seawater\"]\n",
+    "deps = ['cf_xarray', 'palettable', 'seawater']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/.../content/code_gallery/data_access_notebooks/2016-12-20-searching_glider_deployments.ipynb b/.../content/code_gallery/data_access_notebooks/2016-12-20-searching_glider_deployments.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"iris\", \"seawater\"]\n",
+    "deps = ['iris', 'seawater']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/...erbook/content/code_gallery/data_access_notebooks/2017-03-21-ERDDAP_IOOS_Sensor_Map.ipynb b/...erbook/content/code_gallery/data_access_notebooks/2017-03-21-ERDDAP_IOOS_Sensor_Map.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"erddapy\"]\n",
+    "deps = ['erddapy']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/...rbook/content/code_gallery/data_access_notebooks/2017-06-12-NCEI_RA_archive_history.ipynb b/...rbook/content/code_gallery/data_access_notebooks/2017-06-12-NCEI_RA_archive_history.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"owslib\"]\n",
+    "deps = ['owslib']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2017-09-09-hurricane_irma.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2017-09-09-hurricane_irma.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"cf-units\", \"ioos-tools\", \"pyoos\", \"retrying\"]\n",
+    "deps = ['cf-units', 'ioos-tools', 'pyoos', 'retrying']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2017-11-30-rerddap.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2017-11-30-rerddap.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"cartopy\"]\n",
+    "deps = ['cartopy']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2018-02-20-obis.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2018-02-20-obis.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"palettable\"]\n",
+    "deps = ['palettable']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2018-03-01-erddapy.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2018-03-01-erddapy.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"erddapy\", \"palettable\"]\n",
+    "deps = ['erddapy', 'palettable']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2019-03-08-grids-temperature.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2019-03-08-grids-temperature.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"cartopy\", \"gridgeo\", \"netcdf4\", \"palettable\"]\n",
+    "deps = ['cartopy', 'gridgeo', 'netcdf4', 'palettable']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2019-05-27-hurricane_gis_part02.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2019-05-27-hurricane_gis_part02.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"cf-units\", \"ioos-tools\", \"pyoos\", \"retrying\"]\n",
+    "deps = ['cf-units', 'ioos-tools', 'pyoos', 'retrying']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },

diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2020-10-10-GTS.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2020-10-10-GTS.ipynb
@@ -12,21 +12,24 @@
    "source": [
     "import subprocess\n",
     "import sys\n",
-    "\n",
+    "COLAB = \"google.colab\" in sys.modules\n",
     "\n",
     "def _install(package):\n",
-    "    subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
-    "\n",
+    "    if COLAB:\n",
+    "        ans = input(f\"Install { package }? [y/n]:\")\n",
+    "        if ans.lower() in [\"y\", \"yes\"]:\n",
+    "            subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"--quiet\", package])\n",
+    "            print(f\"{ package } installed!\")\n",
     "\n",
     "def _colab_install_missing_deps(deps):\n",
     "    import importlib\n",
-    "\n",
     "    for dep in deps:\n",
     "        if importlib.util.find_spec(dep) is None:\n",
+    "            if dep == \"iris\":\n",
+    "                dep = \"scitools-iris\"\n",
     "            _install(dep)\n",
     "\n",
-    "\n",
-    "deps = [\"ipyleaflet\"]\n",
+    "deps = ['ipyleaflet']\n",
     "_colab_install_missing_deps(deps)"
    ]
   },