[enhancement] add sklearnex version of validate_data, _check_sample_weight
#1757
Workflow file for this run
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| #=============================================================================== | |
| # Copyright 2024 Intel Corporation | |
| # | |
| # Licensed under the Apache License, Version 2.0 (the "License"); | |
| # you may not use this file except in compliance with the License. | |
| # You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, software | |
| # distributed under the License is distributed on an "AS IS" BASIS, | |
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| # See the License for the specific language governing permissions and | |
| # limitations under the License. | |
| #=============================================================================== | |
| name: CI | |
| on: | |
| pull_request: | |
| branches: [ "main" ] | |
| push: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| permissions: read-all | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event_name }}-${{ github.ref_name }}-${{ github.event.number || github.sha }} | |
| cancel-in-progress: true | |
| env: | |
| DPCTL_VERSION: 0.18.1 | |
| DPNP_VERSION: 0.16.0 | |
| DPCTL_PY_VERSIONS: '3.9\|3.11' | |
| jobs: | |
| sklearn_lnx: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - PYTHON_VERSION: "3.9" | |
| SKLEARN_VERSION: "1.1" | |
| - PYTHON_VERSION: "3.10" | |
| SKLEARN_VERSION: "1.2" | |
| - PYTHON_VERSION: "3.11" | |
| SKLEARN_VERSION: "1.3" | |
| name: LinuxNightly/pip Python${{ matrix.PYTHON_VERSION }}_Sklearn${{ matrix.SKLEARN_VERSION }} | |
| runs-on: ubuntu-24.04 | |
| timeout-minutes: 120 | |
| steps: | |
| - name: Checkout Scikit-learn-intelex | |
| uses: actions/checkout@v4 | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.PYTHON_VERSION }} | |
| - name: Get run ID of "Nightly-build" workflow | |
| id: get-run-id | |
| run: | | |
| OTHER_REPO="oneapi-src/oneDAL" | |
| WF_NAME="Nightly-build" | |
| JQ_QUERY='map(select(.event == "workflow_dispatch" or .event == "schedule")) | .[0].databaseId' | |
| RUN_ID=`gh run --repo ${OTHER_REPO} list --workflow "${WF_NAME}" --json databaseId,event --status success --jq "${JQ_QUERY}"` | |
| echo "Detected latest run id of ${RUN_ID} for workflow ${WF_NAME}" | |
| echo "run-id=${RUN_ID}" >> "$GITHUB_OUTPUT" | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| - name: Download oneDAL build artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: __release_lnx | |
| github-token: ${{ github.token }} | |
| repository: oneapi-src/oneDAL | |
| run-id: ${{ steps.get-run-id.outputs.run-id }} | |
| path: ./__release_lnx | |
| - name: Download oneDAL environment artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: oneDAL_env | |
| github-token: ${{ github.token }} | |
| repository: oneapi-src/oneDAL | |
| run-id: ${{ steps.get-run-id.outputs.run-id }} | |
| path: .ci/env | |
| - name: Set Environment Variables | |
| id: set-env | |
| run: | | |
| # Disable SPMD testing | |
| echo "NO_DIST=1" >> "$GITHUB_ENV" | |
| # Determine dpctl support | |
| DPCFLAG="0" | |
| if [ $(echo ${{ matrix.PYTHON_VERSION }} | grep '${{ env.DPCTL_PY_VERSIONS }}') ]; then DPCFLAG=''; fi | |
| echo "DPCFLAG=${DPCFLAG}" >> "$GITHUB_OUTPUT" | |
| # enable coverage report generation | |
| echo "COVERAGE_RCFILE=$(readlink -f .coveragerc)" >> "$GITHUB_ENV" | |
| - name: apt-get | |
| run: sudo apt-get update && sudo apt-get install -y clang-format | |
| - name: dpcpp installation | |
| run: | | |
| # This CI system yields oneAPI dependencies from the oneDAL repository | |
| bash .ci/env/apt.sh dpcpp | |
| - name: describe system | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| bash .ci/scripts/describe_system.sh | |
| - name: Install develop requirements | |
| run: | | |
| python -m venv venv | |
| source venv/bin/activate | |
| pip install -r dependencies-dev | |
| pip list | |
| - name: Build daal4py/sklearnex | |
| run: | | |
| source venv/bin/activate | |
| source .github/scripts/activate_components.sh ${{ steps.set-env.outputs.DPCFLAG }} | |
| python setup.py install --single-version-externally-managed --record=record.txt | |
| - name: Install testing requirements | |
| run: | | |
| source venv/bin/activate | |
| source .github/scripts/activate_components.sh | |
| bash .ci/scripts/setup_sklearn.sh ${{ matrix.SKLEARN_VERSION }} | |
| pip install --upgrade -r requirements-test.txt | |
| pip install $(python .ci/scripts/get_compatible_scipy_version.py ${{ matrix.SKLEARN_VERSION }}) pyyaml | |
| if [ "${{ steps.set-env.outputs.DPCFLAG }}" == "" ]; then pip install dpctl==${{ env.DPCTL_VERSION }} dpnp==${{ env.DPNP_VERSION }}; fi | |
| pip list | |
| - name: Sklearnex testing | |
| run: | | |
| source venv/bin/activate | |
| source .github/scripts/activate_components.sh | |
| export COVERAGE_FILE=$(pwd)/.coverage.sklearnex | |
| cd .ci | |
| ../conda-recipe/run_test.sh | |
| - name: Sklearn testing | |
| run: | | |
| source venv/bin/activate | |
| source .github/scripts/activate_components.sh | |
| export COVERAGE_FILE=$(pwd)/.coverage.sklearn | |
| if [ "${{ steps.set-env.outputs.DPCFLAG }}" == "" ]; then export CPU=cpu; fi | |
| bash .ci/scripts/run_sklearn_tests.sh $CPU | |
| - name: Archive coverage data | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage_lnx_Py${{ matrix.PYTHON_VERSION }}_${{ matrix.SKLEARN_VERSION }} | |
| path: | | |
| .coverage.sklearn | |
| .coverage.sklearnex | |
| include-hidden-files: true | |
| - name: Sklearn testing [preview] | |
| run: | | |
| source venv/bin/activate | |
| source .github/scripts/activate_components.sh | |
| if [ "${{ steps.set-env.outputs.DPCFLAG }}" == "" ]; then export CPU=cpu; fi | |
| export SKLEARNEX_PREVIEW='YES' | |
| bash .ci/scripts/run_sklearn_tests.sh $CPU | |
| sklearn_win: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - PYTHON_VERSION: "3.9" | |
| SKLEARN_VERSION: "1.1" | |
| - PYTHON_VERSION: "3.10" | |
| SKLEARN_VERSION: "1.2" | |
| - PYTHON_VERSION: "3.11" | |
| SKLEARN_VERSION: "1.3" | |
| name: WindowsNightly/pip Python${{ matrix.PYTHON_VERSION }}_Sklearn${{ matrix.SKLEARN_VERSION }} | |
| runs-on: windows-2022 | |
| timeout-minutes: 120 | |
| steps: | |
| - name: Checkout Scikit-learn-intelex | |
| uses: actions/checkout@v4 | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.PYTHON_VERSION }} | |
| - name: Get run ID of "Nightly-build" workflow | |
| id: get-run-id | |
| shell: bash | |
| run: | | |
| OTHER_REPO="oneapi-src/oneDAL" | |
| WF_NAME="Nightly-build" | |
| JQ_QUERY='map(select(.event == "workflow_dispatch" or .event == "schedule")) | .[0].databaseId' | |
| RUN_ID=`gh run --repo ${OTHER_REPO} list --workflow "${WF_NAME}" --json databaseId,event --status success --jq "${JQ_QUERY}"` | |
| echo "Detected latest run id of ${RUN_ID} for workflow ${WF_NAME}" | |
| echo "run-id=${RUN_ID}" >> "$GITHUB_OUTPUT" | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| - name: Download oneDAL build artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: __release_win | |
| github-token: ${{ github.token }} | |
| repository: oneapi-src/oneDAL | |
| run-id: ${{ steps.get-run-id.outputs.run-id }} | |
| path: ./__release_win | |
| - name: Download Intel BaseKit artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: intel_oneapi_basekit | |
| github-token: ${{ github.token }} | |
| repository: oneapi-src/oneDAL | |
| run-id: ${{ steps.get-run-id.outputs.run-id }} | |
| - name: Decompress Intel BaseKit | |
| shell: cmd | |
| run: | | |
| tar -xvzf oneapi.tar.gz | |
| echo "Unzip complete" | |
| - name: Set Environment Variables | |
| id: set-env | |
| shell: cmd | |
| run: | | |
| echo C:\msys64\usr\bin;>> %GITHUB_PATH% | |
| echo NO_DIST=YES>> %GITHUB_ENV% | |
| set DPCTL_TEMP="${{ env.DPCTL_PY_VERSIONS }}" | |
| if not %DPCTL_TEMP:${{ matrix.PYTHON_VERSION }}=%==%DPCTL_TEMP% (echo DPCFLAG=>> %GITHUB_OUTPUT%) else (echo DPCFLAG="0">> %GITHUB_OUTPUT%) | |
| echo COVERAGE_RCFILE=%cd%\.coveragerc>> %GITHUB_ENV% | |
| - name: Download Intel OpenCL CPU Runtime artifact | |
| if: ${{ steps.set-env.outputs.DPCFLAG == '' }} | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: opencl_rt_installer | |
| github-token: ${{ github.token }} | |
| repository: oneapi-src/oneDAL | |
| run-id: ${{ steps.get-run-id.outputs.run-id }} | |
| path: . | |
| - name: Install Intel OpenCL CPU Runtime | |
| if: ${{ steps.set-env.outputs.DPCFLAG == '' }} | |
| run: | | |
| Start-Process msiexec -ArgumentList "/i opencl_rt.msi /qn" -Wait | |
| echo "Installed Intel OpenCL CPU Runtime" | |
| - name: Install dependencies | |
| shell: cmd | |
| run: | | |
| python -m venv venv | |
| call .\venv\Scripts\activate.bat | |
| pip install --upgrade setuptools | |
| pip install cpufeature clang-format pyyaml | |
| pip install -r dependencies-dev | |
| - name: System info | |
| shell: cmd | |
| run: | | |
| call .\venv\Scripts\activate.bat | |
| call .\oneapi\setvars.bat | |
| bash .ci/scripts/describe_system.sh | |
| - name: Build daal4py/sklearnex | |
| shell: cmd | |
| run: | | |
| call .\venv\Scripts\activate.bat | |
| call .\.github\scripts\activate_components.bat ${{ steps.set-env.outputs.DPCFLAG }} | |
| set PREFIX=. | |
| set PYTHON=python | |
| call .\conda-recipe\bld.bat | |
| - name: Install testing requirements | |
| shell: cmd | |
| run: | | |
| call .\venv\Scripts\activate.bat | |
| call .\.github\scripts\activate_components.bat ${{ steps.set-env.outputs.DPCFLAG }} | |
| bash .ci/scripts/setup_sklearn.sh ${{ matrix.SKLEARN_VERSION }} | |
| pip install --upgrade -r requirements-test.txt | |
| for /f "delims=" %%c in ('python .ci\scripts\get_compatible_scipy_version.py ${{ matrix.SKLEARN_VERSION }}') do set SCIPY_VERSION=%%c | |
| pip install %SCIPY_VERSION% | |
| if "${{ steps.set-env.outputs.DPCFLAG }}"=="" pip install dpctl==${{ env.DPCTL_VERSION }} dpnp==${{ env.DPNP_VERSION }} | |
| pip list | |
| - name: Sklearnex testing | |
| shell: cmd | |
| run: | | |
| call .\venv\Scripts\activate.bat | |
| call .\.github\scripts\activate_components.bat ${{ steps.set-env.outputs.DPCFLAG }} | |
| set PYTHON=python | |
| set COVERAGE_FILE=%cd%\.coverage.sklearnex | |
| cd .. | |
| call scikit-learn-intelex\conda-recipe\run_test.bat scikit-learn-intelex\ | |
| - name: Sklearn testing | |
| shell: cmd | |
| run: | | |
| call .\venv\Scripts\activate.bat | |
| call .\.github\scripts\activate_components.bat ${{ steps.set-env.outputs.DPCFLAG }} | |
| set COVERAGE_FILE=%cd%\.coverage.sklearn | |
| if "${{ steps.set-env.outputs.DPCFLAG }}"=="" set CPU=cpu | |
| bash .ci/scripts/run_sklearn_tests.sh %CPU% | |
| - name: Archive coverage data | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage_win_Py${{ matrix.PYTHON_VERSION }}_${{ matrix.SKLEARN_VERSION }} | |
| path: | | |
| .coverage.sklearn | |
| .coverage.sklearnex | |
| include-hidden-files: true | |
| - name: Sklearn testing [preview] | |
| shell: cmd | |
| run: | | |
| call .\venv\Scripts\activate.bat | |
| call .\.github\scripts\activate_components.bat ${{ steps.set-env.outputs.DPCFLAG }} | |
| if "${{ steps.set-env.outputs.DPCFLAG }}"=="" set CPU=cpu | |
| set SKLEARNEX_PREVIEW=YES | |
| bash .ci/scripts/run_sklearn_tests.sh %CPU% |