1.0.1: minimal support for OpenEphys, fixes #7

CHANGELOG.md

@@ -1,7 +1,15 @@
-Changelog
----------
+# Changelog
 
-0.3.0
-------
-* add spike groups in the picking interface
-* add the live recording option in the EphysBinViewer
+## [Unreleased]
+
+## [1.0.1] - 2024-12-06
+
+### added
+- minimal support for Open Ephys [issue 7](https://github.com/int-brain-lab/viewephys/issues/7)
+
+## [1.0.0] - 2024-10-09
+
+### added
+- add spike groups in the picking interface
+- add the live recording option in the EphysBinViewer
+- 

setup.py

@@ -8,7 +8,7 @@
 
 setuptools.setup(
     name="viewephys",
-    version="1.0.0",
+    version="1.0.1",
     author="Olivier Winter",
     description="Raw Neuropixel data viewer for numpy",
     long_description=long_description,

src/viewephys/gui.py

@@ -64,7 +64,8 @@ def open_file(self, *args, live=False, file=None):
         if file is None:
             file, _ = QtWidgets.QFileDialog.getOpenFileName(
                 parent=self, caption='Select Raw electrophysiology recording',
-                directory=self.settings.value('bin_file_path'), filter='*.*bin')
+                directory=self.settings.value('bin_file_path'),
+                 filter='Electrophysiology files (*.*bin *.dat)')
         if file == '':
             return
         file = Path(file)
@@ -95,7 +96,7 @@ def on_horizontalSliderValueChanged(self):
     def on_horizontalSliderReleased(self):
         first = int(float(self.horizontalSlider.value()) * NSAMP_CHUNK)
         last = first + int(NSAMP_CHUNK)
-        data = self.sr[first:last, :-self.sr.nsync].T
+        data = self.sr[first:last, :self.sr.nc - self.sr.nsync].T
         # get parameters for both AP and LFP band
 
         if self.sr.type == 'lf':
@@ -111,7 +112,7 @@ def on_horizontalSliderReleased(self):
             if not self.cbs[k].isChecked():
                 continue
             if k == 'destripe':
-                data = fcn_destripe(x=data, fs=self.sr.fs, channel_labels=True, h=self.sr.geometry, neuropixel_version=self.sr.major_version)
+                data = fcn_destripe(x=data, fs=self.sr.fs, channel_labels=False, h=self.sr.geometry, neuropixel_version=self.sr.major_version)
             self.viewers[k] = viewephys(data, self.sr.fs, channels=self.sr.geometry, title=k, t0=t0 * T_SCALAR, t_scalar=T_SCALAR, a_scalar=A_SCALAR)
 
     def closeEvent(self, event):

src/viewephys/raster.py

@@ -136,7 +136,7 @@ def open_file(self):
             parent=self,
             caption='Select Raw electrophysiology recording',
             directory=self.settings.value('bin_file_path'),
-            filter='*.*bin')
+            filter='SpikeGlx (*.*bin);; Open Ephys (*.dat)')
         if file == '':
             return
         file = Path(file)