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Doc for placing mouse onto previous Training Phase
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GaelleChapuis committed Oct 3, 2024
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29 changes: 29 additions & 0 deletions docs/source/faq.rst
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Expand Up @@ -121,3 +121,32 @@ Frame2TTL
Look for a voltage step in Frame2TTL's output when the calibration routine switches from dark to light.
#. If you *do* see the change in the TTL signal, the Bpod might be faulty. Try using a different Bpod unit.
#. If you do *not* see the voltage step, the Frame2TTL might be faulty. Try using a different Frame2TTL unit.


Move a mouse onto a previous training stage
===========================================
Training phases enfold according to an automated procedure, see the `mouse training protocol on Figshare <https://
figshare.com/articles/preprint/A_standardized_and_reproducible_method_to_measure_decision-making
_in_mice_Appendix_2_IBL_protocol_for_mice_training/11634729?file=38099442>`_ for a description of these phases.

However, it is possible that one wants to overwrite the automated progression, and bring back an animal onto a previous
training stage.

In this case:

1. Select the training protocol on the GUI
2. Select the wanted training phase manually


.. figure:: img/training_phase_manual_update.png
:width: 100%
:class: with-border

Select the training phase manually using the arrows.

On the next day of training, the "automatic" criteria will be computed assuming the training phase last used, i.e.
the one you manually selected in this instance.

For example, if you have a mouse on Training Phase 5, and move it manually to Phase 4 (which can be useful when
trying to debias an animal), the next session on "automatic" mode will compute the stage progression from stage 4,
and disregard the fact that the mouse was on Phase 5 beforehand.
Binary file added docs/source/img/training_phase_manual_update.png
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