This is a fork of Michael Brudno's program LAGAN and multi-LAGAN.
Brudno, Michael, et al. "LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA." Genome research 13.4 (2003): 721-731.
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LAGAN: large-scale multiple alignment of genomic DNA
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LAGAN: large-scale multiple alignment of genomic DNA
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