Sccomp insekp #40
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Sccomp insekp #40
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the last commit has code to make plots like this:
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I have improved the figure in previous comment by showing "odds-ratios" in the x-axis instead of "log-odds-ratios". Added some text to explain how the contrasts are calculated and how odds-ratios can be interpreted. |
nick-dil
approved these changes
Dec 17, 2024
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@nick-dil approves this PR,with some remarks:
- I will need to implement the changes @hansvancalster made in this PR to the rmd we used for sccomp analysis on the HPC (https://github.com/slambrechts/INBO_eDNA_metabarcoding_BODEM/issues/218).
- Maybe its a bit weird to work in separate repositories for the same analysis - > Should we look to centralize this code in 1 repo only?
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This PR is a test for sccomp package on a subset of insekp data. Most relevant to look at is how to get significant taxa based on c_FDR and plot only those taxa.