Skip to content

Commit

Permalink
update-readme
Browse files Browse the repository at this point in the history
  • Loading branch information
robinredX committed Apr 11, 2024
1 parent 162bd5c commit bc8bbfc
Showing 1 changed file with 3 additions and 0 deletions.
3 changes: 3 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -66,8 +66,11 @@ Interactive tutorials including required data are available as part of this repo

### A note on the supported formats
bulk RNAseq/Proteomics: A tab seperated file (gene symbols in rows, sample names in columns), or an h5ad compatible with Scanpy >=1.8.0.

scRNAseq: An h5ad compatible with Scanpy >=1.8.0. The cell metadata (.obs) must contain cell type labels (By default in column cell_type)

Spatial transcriptomics: A h5ad compatible with Scanpy >=1.8.0.

Gene ID formats should match between scRNAseq and bulk/spatial data but can be anything (HGNC symbols, ENSEMBL etc.).

The code is also available via [Zenodo](https://zenodo.org/doi/10.5281/zenodo.10570403)
Expand Down

0 comments on commit bc8bbfc

Please sign in to comment.